Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L06
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   120   6e-28
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   4.2  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  120 bits (290), Expect = 6e-28
 Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
 Frame = +3

Query: 117 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 293
           R  LTPGTV I+LAGRH GKR               TGP   N  PLRRI Q +VI TS 
Sbjct: 68  RKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSL 127

Query: 294 KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQAEDIFATKKEKYVPSEQRMADQKLVDE 473
           KV++   K+P H++D YF                ++IFA+ K +Y  SEQR  D K VD 
Sbjct: 128 KVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDA 181

Query: 474 AVIKAIRLRPEQKTLRGYLRASFGLRSSQFPHRLRF 581
            ++ AI+  PE K L GYL   F L  +Q+PH+++F
Sbjct: 182 PILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 45  FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 179
           FYPT+   + RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 109 VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 201
           V R+ T+L   ++C F W  A T A+ +CS  CC
Sbjct: 74  VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,908
Number of Sequences: 27780
Number of extensions: 257165
Number of successful extensions: 906
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)