Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L06
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 293 SRCSN-DIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAH 141
           SRC+N D    N       +++ SS+   +  Q++N+H+  A  S++  N H
Sbjct: 412 SRCANFDNQDNNHYNHNHNQARHSSK---SDNQNNNQHNDQAHHSSKSNNRH 460


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 500 PESDRLYHGLVDQLLVSHTLL*WNVFLL 417
           P   R+ HGL+  L+V   +  W V +L
Sbjct: 106 PFQIRMKHGLIRDLIVDRDVPTWEVNIL 133


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 156 PTECTLCRE*G*VSSY 109
           PTEC  CR  G   +Y
Sbjct: 37  PTECVFCRNNGEEEAY 52


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 455 PEAGRRGRDKGDQTPARAEDTPRLPQG 535
           P+  R  +D+G    +   DT R P G
Sbjct: 254 PQPDRTSKDQGTIGESEVFDTTRYPHG 280


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 407 KDVLCLLPLDAAFHALL 357
           +DV+C  P+    HALL
Sbjct: 164 EDVICSTPIGNLSHALL 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,338
Number of Sequences: 438
Number of extensions: 2861
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)