Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L06
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...   109   1e-24
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...   109   1e-24
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...   102   2e-22
At5g44290.1 68418.m05421 protein kinase family protein contains ...    29   3.0  
At5g14930.2 68418.m01752 leaf senescence-associated protein (SAG...    29   3.0  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   5.2  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    27   6.9  
At5g62910.1 68418.m07894 expressed protein predicted proteins, A...    27   9.1  
At3g55160.1 68416.m06126 expressed protein                             27   9.1  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  109 bits (262), Expect = 1e-24
 Identities = 72/179 (40%), Positives = 89/179 (49%)
 Frame = +3

Query: 45  FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFT 224
           FYP +D ++     +  +K  +  R ++TPGTV I+LAGR  GKR              T
Sbjct: 64  FYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121

Query: 225 GPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQAEDI 404
           GPF  N  PLRR+ Q YVIGTSTKVD+    L    DD YF              + E  
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLD-KFDDKYF---GKVAEKKKKKTEGEFF 177

Query: 405 FATKKEKYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGYLRASFGLRSSQFPHRLRF 581
            A K+EK    + +  DQK VD A+IKAI   PE KT   YL A F L+    PH L F
Sbjct: 178 EAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKT---YLGARFSLKQGMKPHELVF 233


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  109 bits (262), Expect = 1e-24
 Identities = 72/179 (40%), Positives = 89/179 (49%)
 Frame = +3

Query: 45  FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFT 224
           FYP +D ++     +  +K  +  R ++TPGTV I+LAGR  GKR              T
Sbjct: 64  FYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121

Query: 225 GPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQAEDI 404
           GPF  N  PLRR+ Q YVIGTSTKVD+    L    DD YF              + E  
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLD-KFDDKYF---GKVAEKKKKKTEGEFF 177

Query: 405 FATKKEKYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGYLRASFGLRSSQFPHRLRF 581
            A K+EK    + +  DQK VD A+IKAI   PE KT   YL A F L+    PH L F
Sbjct: 178 EAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKT---YLGARFSLKQGMKPHELVF 233


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score =  102 bits (244), Expect = 2e-22
 Identities = 66/179 (36%), Positives = 86/179 (48%)
 Frame = +3

Query: 45  FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFT 224
           FYP +D  +   + +       + + ++TPGTV I+LAGR  GKR              T
Sbjct: 64  FYPAEDVKKPLVNRRK--PKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 121

Query: 225 GPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQAEDI 404
           GPF  N  PLRR+ Q YVIGTSTK+D+         DD YF              + E  
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKIDISGVN-TEKFDDKYF---GKVAEKKKKKTEGEFF 177

Query: 405 FATKKEKYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGYLRASFGLRSSQFPHRLRF 581
            A K+EK    +++  DQK VD A+IK+I   PE   L+ YL A F L     PH L F
Sbjct: 178 EAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPE---LKVYLGARFSLSQGMKPHELVF 233


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 256 RRGHALKAKGPVKSSRPLGNTPTSTTRLPACLPAN 152
           RR H  K   PVK++ P  +T      L +C+P N
Sbjct: 468 RRSHERKLIPPVKANNPSLSTAVENPYLRSCVPGN 502


>At5g14930.2 68418.m01752 leaf senescence-associated protein
           (SAG101) nearly identical to leaf senescence-associated
           gene SAG101 (putative acyl hydrolase) [Arabidopsis
           thaliana] GI:8699168; contains Pfam profile PF01764:
           Lipase
          Length = 537

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 447 MADQKLVDEAVIKAIRLRPEQKTLR 521
           +AD +L+ E VIK I  R E K LR
Sbjct: 265 LADSRLIPEDVIKGIEKRAEMKNLR 289


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 186 ARHACQRVCPPTECTLCRE 130
           ARHAC+R C   EC  C E
Sbjct: 411 ARHACRRRCCDGECPPCSE 429


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 120 VSSYAHVY*NSCHENDP*SCPEWGRMI 40
           +  +A V  +SC+END  SC  W  +I
Sbjct: 345 LKQFAQVLKSSCNENDTLSCTLWDSLI 371


>At5g62910.1 68418.m07894 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 327

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 121 LTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRVPC-AGFR 267
           L +L  Q +F       +SV+    C   +CY  LDL  S  +PC  GFR
Sbjct: 227 LPNLAKQLSFPELDKRFSSVAIPSSC--PICYEDLDLTDSNFLPCPCGFR 274


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +1

Query: 136 AQCAFCWR-----ADTLASVSCSLECCRVVC-YSSLDLLLSTR 246
           AQC FCW      AD ++ +  + + C  +C +SSL  L   R
Sbjct: 279 AQCIFCWSSVVRLADIVSKIPFAGDICSEICSFSSLSRLCLIR 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,305,237
Number of Sequences: 28952
Number of extensions: 239120
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)