Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L05
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0289 - 22053561-22055666,22055745-22055771 29 1.0
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 27 3.1
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 27 5.3
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 27 5.3
01_01_0054 + 411675-411911,412097-412213,412401-412439,412703-41... 27 5.3
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 26 7.1
09_06_0264 - 21929086-21931368 26 9.3
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 26 9.3
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142... 26 9.3
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 26 9.3
>09_06_0289 - 22053561-22055666,22055745-22055771
Length = 710
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 120 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 28
VRW EW + LV+ + GL+W ++A ++
Sbjct: 40 VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 237 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 145
N++G + RG+V + V++ V YE + EH
Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 156 LKEHIRLF-EARRVRWTVEWIAKRLVINNKG 67
+ +H+ F E R R + W+A +V+NNKG
Sbjct: 441 MAKHVTSFAEIRSFRGSPYWMAPEVVMNNKG 471
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 26 IRLNLVAMI*HHLRPLL-----LITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTF 190
+R++L H+LRPL + L A + RTR A L+ SYTT A
Sbjct: 106 LRISLYVPDSHNLRPLAAYLRDFVKGLAAKYPFWNRTRGADHFLVACHDWGSYTTTAHGD 165
Query: 191 LTNST 205
L +T
Sbjct: 166 LRRNT 170
>01_01_0054 +
411675-411911,412097-412213,412401-412439,412703-412839,
413322-413670,413815-414495
Length = 519
Score = 26.6 bits (56), Expect = 5.3
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -3
Query: 255 HLLLFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVIN 76
H LFRN+ FR+ + E + ++L VY D K E + + + W K + N
Sbjct: 165 HAPLFRNVSVFRR---SYELMERLLKVFVYHDGAKPIFHSPELKGIYASEGWFMKLMEGN 221
Query: 75 NKGLKWCQIMATRFKRIYENKELE 4
+ A F Y +++LE
Sbjct: 222 QHFVVRDPNRAHLFYLPYSSRQLE 245
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 179 PSWYTKTSLKNILGSLKHVESAGRSNG*PKGLLSITKA 66
P WY++ +KN+ L+ + RS G GL +TKA
Sbjct: 57 PVWYSQQEVKNL---LQRISEGNRSTG---GLTFVTKA 88
>09_06_0264 - 21929086-21931368
Length = 760
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 120 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 28
V+W EW + LV+ + G++W ++A ++
Sbjct: 8 VQWWDEWQLRILVLCSLGIQWFLLLAAPMRK 38
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 68 ASNGVRSWLLDSNGYT-KTKNWN 3
++NG R+WL+D N T K +W+
Sbjct: 286 SANGTRTWLVDINSETLKPASWD 308
>03_01_0177 +
1424773-1424850,1425307-1425391,1425498-1425577,
1425771-1425898,1425962-1426049,1426187-1426277,
1426712-1426881,1427151-1427438,1427527-1427643,
1427924-1427976,1428029-1428090,1429042-1429118,
1429269-1429322,1429417-1429476,1429581-1429658,
1429805-1429851,1429933-1430051,1430280-1430364,
1430443-1430557,1430662-1430784,1430869-1430969,
1431346-1431475
Length = 742
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Frame = +1
Query: 157 DVFVYHEGEHF---PYKFNVPP 213
D+FV +GEHF P KF+V P
Sbjct: 714 DIFVQSDGEHFGFLPTKFSVLP 735
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 159 ILKEHIRLFE--ARRVRWTVEWIAKRLVINNKGLKWCQIM 46
++KEH R F+ A V WT+ V N K W +++
Sbjct: 803 MVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVV 842
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,061,063
Number of Sequences: 37544
Number of extensions: 151344
Number of successful extensions: 343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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