Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L05
(347 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 29 0.69
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical pr... 27 2.8
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 27 3.7
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 27 3.7
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 27 3.7
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 27 4.9
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 26 6.4
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 26 6.4
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 26 8.5
>AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine
receptor, class w protein108 protein.
Length = 196
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +2
Query: 71 LLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 208
++++ ++L +H+ + + ++A K SLR + +TTK F+T + F
Sbjct: 58 VIIVLTILLLHA-LNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 13 FVFVYPFESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKD 159
FVFV P+ + +D P+EA +D + F+ T FF D
Sbjct: 289 FVFVIPWLAHQNDHYPWEAANVDKQEVKLAFENTIIITAHGYDKKFFDD 337
>Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical
protein C34C12.9 protein.
Length = 152
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 125 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 256
R+S SLR T ST T S+ P + + P MF N+++C
Sbjct: 77 RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 34 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 180
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 34 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 180
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 34 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 180
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 140 GSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTK 12
GS KH + S T+++N + +W LDSNG +++
Sbjct: 140 GSSKHYHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSR 182
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 193 YKFNVPPY--FSKTNDVPKQ*EML 258
++FNVPPY F + +D+P E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 193 YKFNVPPY--FSKTNDVPKQ*EML 258
++FNVPPY F + +D+P E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 86 SLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTFPLT 217
+L AIH Q R S L+C ++ ++ +++S PLT
Sbjct: 7 TLTAIHQQQQSHNRFSNPLVCVGQLDHHSLLPDDSISSSLAPLT 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,254,504
Number of Sequences: 27780
Number of extensions: 142545
Number of successful extensions: 350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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