Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L05
(347 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59330.1 68416.m06615 anthocyanin-related membrane protein fa... 29 0.64
At3g13680.1 68416.m01727 F-box family protein contains F-box dom... 29 1.1
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 28 1.5
At2g12480.1 68415.m01349 serine carboxypeptidase S10 family prot... 27 2.6
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident... 27 4.5
At3g50380.1 68416.m05511 expressed protein 26 6.0
At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containi... 26 6.0
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain... 26 7.9
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 26 7.9
>At3g59330.1 68416.m06615 anthocyanin-related membrane protein
family similar to anthocyanin-related membrane protein 1
(GI:16416383), anthocyanin-related membrane protein 2
(GI:16416385), anthocyanin-related membrane protein 3
(GI:16416387) [Arabidopsis thaliana]
Length = 241
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 4 FQFFVFV-YPFESSSHDLTPFEAFVIDNKPFGYPF 105
F FF F +P SH+LT FE F+ N P F
Sbjct: 43 FSFFFFSNHPIFKHSHELTKFEIFIGINAPTSQSF 77
>At3g13680.1 68416.m01727 F-box family protein contains F-box domain
Pfam:PF00646
Length = 395
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 80 ITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFL 193
+TSL AI ST Q+ SKS IC + ++ K F+
Sbjct: 21 LTSLRAIRSTCQKWNSLSKSQICGRKATAAENKFLGFM 58
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 237 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 136
N++ F G EFV +++ V YED + E IR+
Sbjct: 534 NVVSF--FNGEPEFVNELVTLVSYEDTVPEKIRI 565
>At2g12480.1 68415.m01349 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II precursor
(Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
vulgare]
Length = 442
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -3
Query: 186 VLAFVVYEDILKEHIRL-----FEARRVRWTVEWIAKRLVINNKGLKWCQIMATRFKRIY 22
+L V Y I+++ +RL A R R EW +N G+ M KRI
Sbjct: 277 ILLDVCYPSIVQQELRLKKMNALHANRTRLPYEWTMCSNRLNYSGIDGYIDMLPSLKRII 336
Query: 21 ENKELEW 1
+N+ W
Sbjct: 337 QNQTPVW 343
>At1g50030.1 68414.m05614 target of rapamycin protein (TOR)
identical to pTOR [Arabidopsis thaliana] GI:12002902;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FATC domain
Length = 2481
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 162 DILKEHIRLFEARRVRWTVEWIAKRLVINNKGL 64
+ L+ +R+ E R RW V+W + GL
Sbjct: 231 EALRACLRVIEKRETRWRVQWYYRMFEATQDGL 263
>At3g50380.1 68416.m05511 expressed protein
Length = 3071
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 162 DILKEHIRLFEARRVRWTVEWIAKRLVINNKG 67
DI+ E+ LF + W +EW K LV + G
Sbjct: 661 DIVFEYSSLFSLALLIWQIEWAQKLLVDDYTG 692
>At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profiles PF01535: PPR repeat,
PF03161 LAGLIDADG DNA endonuclease family
Length = 547
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 7 QFFVFVYPFESSSHDLTPFEAFVIDNKPFGY 99
QF +++P + D+ PFE + + + FG+
Sbjct: 375 QFREWLHPLSNFQEDIIPFEFYSVPHSYFGF 405
>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein contains Pfam
profile PF00917: MATH domain
Length = 898
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 65 RPLLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLN 244
R LLL +L + + RTRR + +L C + S + + T PL+ L+ FL
Sbjct: 297 RVLLLEKEVLDLKIELDRTRREACNLFC--------PEVSNWCFSKTLPLSKLQEKGFLE 348
Query: 245 NKR 253
N +
Sbjct: 349 NNK 351
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 237 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 136
N++ F G EFV +++ V YED + IR+
Sbjct: 285 NVVSF--FNGEPEFVNELVTLVSYEDTVPAKIRI 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,872,563
Number of Sequences: 28952
Number of extensions: 134812
Number of successful extensions: 348
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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