Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L04
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   4.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   6.2  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.2  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.2  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   8.2  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   8.2  

>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 379 QEKLNLHLLGNFTCNLDPNVEFLM 308
           QE++ L +L NFTC  + +V+FL+
Sbjct: 528 QEQM-LQVLRNFTCQKEESVDFLL 550


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 158  VAIQKVEVDKLVTYYEYTYVNISASVHMNEVQSQL 262
            V++ + ++D    Y+E  YV+ S S+    +++ L
Sbjct: 1356 VSVGQAKLDNFTVYFENVYVSASLSILRRFIETSL 1390


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 65   KLDQLMLFGSVQGQMEP 15
            KL +L++FGS+ G +EP
Sbjct: 1033 KLGKLLVFGSIFGYLEP 1049


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 386 KYDSRGFEIPLHVNSENFFLLNHFIH 463
           KY+  G  +P+     N+F L+HFIH
Sbjct: 667 KYEDHGKNLPI-----NYFGLDHFIH 687


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 137 LPCIQEDVDAIMRTS*ELASRSCRKLDQLMLFGSVQGQMEP 15
           L  + E VD ++RT+ +  ++SC++++  +     + QM P
Sbjct: 35  LRAVDEVVD-VLRTALQEKNQSCKRIESFVANHQPESQMSP 74


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 44  TALTDP--AFYMIWKRVLKMFSLLHQ-RLPEYKEEELALPDVAIQKVEVDKL 190
           T +TDP  A Y       + +   H+ RL EY+E ELA  +   ++ E++KL
Sbjct: 92  TFITDPKHADYAAESGASRNYEPWHEKRLQEYEENELAERNDIPEEDEMEKL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,152
Number of Sequences: 5004
Number of extensions: 35343
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)