Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L04
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447...    31   0.50 
01_07_0258 - 42350630-42350716,42351031-42351081,42351166-423511...    29   1.5  
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199...    27   8.2  

>12_02_0067 +
           13144002-13144203,13144471-13144529,13144638-13144713,
           13144802-13144873,13144969-13145056,13145365-13145601,
           13145705-13145910,13145946-13146122,13146220-13146251,
           13146330-13146432,13146547-13146815,13148029-13148175,
           13148272-13148412,13148509-13148595,13148841-13148931,
           13149093-13149192,13149292-13149352,13149442-13149663,
           13149756-13149872,13149972-13150061,13150168-13150344
          Length = 917

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  MFSLLHQRLPEYKEEELALPDVAIQKVEVDKLVTYYEYTYVNISASVHMNEVQSQLVYDK 274
           M + + +RLP +  E+  +   +   + ++   TYY   +VN ++  ++N+   ++ Y++
Sbjct: 316 MQNAVKERLPNFTREQSEMIKGSADYIAINHYTTYYVSHHVNKTSISYLNDWDVKISYER 375

Query: 275 ESVLV-QQARLN 307
             V + +QA  N
Sbjct: 376 NGVPIGKQAYSN 387


>01_07_0258 -
           42350630-42350716,42351031-42351081,42351166-42351198,
           42351338-42351430,42351547-42351639,42351717-42351812,
           42351911-42351967,42352047-42352148,42352317-42352502,
           42352650-42352916
          Length = 354

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 56  DPAFYMIWKRVLKMFSLLHQRLPE-YKEEELALPDVAIQKVEVDKLVTYYEYTYVNISAS 232
           D  ++ +WKRV K        L E Y+E+   L +V I K E+D +   Y+     I  +
Sbjct: 253 DGVYFEVWKRVAKQKMEFTDALSELYREDMFPLRNVDI-KDELDNI--RYDIYVACIDET 309

Query: 233 VHMNEVQSQLVYDKESVLVQQAR 301
           V  NE + QL+ +    +V + R
Sbjct: 310 VPENEAR-QLIKEAVIKMVHRTR 331


>05_07_0267 +
           28818396-28818513,28819292-28819697,28819796-28819973,
           28820414-28820553,28820629-28821874,28821952-28822052,
           28822170-28822314,28822755-28822823,28822910-28822955,
           28823049-28823422,28823622-28823701,28823813-28823948,
           28824199-28824358,28824582-28824664,28825417-28825545
          Length = 1136

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 38  YQTALTDPAFYMIW--KRVLKMFSLLHQRLPEYKEEELALP 154
           Y  ++TD A    W  KR  + F  LH+RL EY +  L LP
Sbjct: 713 YSVSVTD-ANGNSWSIKRRFRHFEELHRRLKEYSQYNLHLP 752


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,818,609
Number of Sequences: 37544
Number of extensions: 212139
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)