Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L04
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-9|CAB63405.1|  348|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   9.8  

>Z98877-9|CAB63405.1|  348|Caenorhabditis elegans Hypothetical
           protein Y69H2.8 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 409 DPTTCQLREFLPAESLHSRIGCRRKRD 489
           DP   Q+R+ L   SL SR+  RR  D
Sbjct: 88  DPRAIQIRDLLGPRSLSSRLSSRRNLD 114


>U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical
           protein C04E7.3 protein.
          Length = 518

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 443 GRNSLS*HVVGSQNRGC--HI*VPRKT*PPP 357
           GRNSLS H  G  +R    H  +PR T  PP
Sbjct: 19  GRNSLSRHESGDSSRSTQGHASLPRNTVGPP 49


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 400  AAVIFRCQEKLNLHLLGNFTCNLDPNVEFL 311
            A ++  C ++    LL NF  + DP++EF+
Sbjct: 8510 ACLVPHCDDEYCCQLLNNFAKSFDPSLEFV 8539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,566
Number of Sequences: 27780
Number of extensions: 193191
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)