Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L04
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    28   3.0  
At1g65230.1 68414.m07395 expressed protein                             28   3.9  
At5g61550.1 68418.m07724 protein kinase family protein contains ...    27   5.2  
At3g18070.1 68416.m02298 glycosyl hydrolase family 1 protein con...    27   5.2  
At2g34180.1 68415.m04183 CBL-interacting protein kinase 13 (CIPK...    27   6.9  
At2g10440.1 68415.m01097 hypothetical protein                          27   9.1  

>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +2

Query: 95  MFSLLHQRLPEYKEEELALPDVAIQKVEVDKLVTYY 202
           M +++ +RLP++ E+E+ +   +I  V +++  TYY
Sbjct: 316 MQNIVKERLPKFTEKEVKMVKGSIDFVGINQYTTYY 351


>At1g65230.1 68414.m07395 expressed protein
          Length = 286

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 101 SLLHQRLPEYKEEELALPDVAIQKVEVDKLVTYYEY 208
           S +H RLP+   +     +V+I K EVDKLV   ++
Sbjct: 30  SKIHHRLPQVMNDSTRT-EVSIDKSEVDKLVDKIDF 64


>At5g61550.1 68418.m07724 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain;
           protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
          Length = 845

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 89  LKMFSLLHQRLPEYKEEELALPDVAIQKVEVDKLVTYYEYTYVNISAS 232
           L M   LH+R  E+K E  A     +Q   V   V Y  YT+  I+A+
Sbjct: 439 LMMKEALHRREAEFKAERDAREKDKLQASLVSPGVQYQHYTWEEIAAA 486


>At3g18070.1 68416.m02298 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-mannosidase enzyme (GI:17226270)
           [Lycopersicon esculentum]
          Length = 501

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +2

Query: 101 SLLHQRLPEYKEEELALPDVAIQKVEVDKLVTYY 202
           +++ +RLP++ EEE+ +   +I  V +++  TY+
Sbjct: 307 NIVKERLPKFTEEEVKMVKGSIDFVGINQYTTYF 340


>At2g34180.1 68415.m04183 CBL-interacting protein kinase 13 (CIPK13)
           identical to CBL-interacting protein kinase 13
           [Arabidopsis thaliana] gi|13249125|gb|AAK16688
          Length = 502

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 158 VAIQKVEVDKLVTYYEYTYVNISASVHMNEVQSQLVYDKESVLVQQARLNHKKFNI 325
           + + K E+ KL+ +  +  V ++ ++H  E  +  V DKE + V+     H K  I
Sbjct: 52  ILMDKYEIGKLLGHGSFAKVYLARNIHSGEDVAIKVIDKEKI-VKSGLAGHIKREI 106


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 89  LKMFSLLHQRLPEYKEEELALPDVAIQKVEVDKL 190
           L + SL+HQR+ E   E  +LP   +Q   ++KL
Sbjct: 326 LPVLSLMHQRVAEKLRETESLPPQPMQAQWIEKL 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,972
Number of Sequences: 28952
Number of extensions: 175610
Number of successful extensions: 365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)