Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L02
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   3.4  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   4.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   7.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = +1

Query: 211 STWPRMAQTLGALTIRPGNLS*TVSPPQS---NVGTSTPSGISITVRSNRYWAC--YALT 375
           ST   +   +GA T+   +L+ TVSP +S      +ST S  + T+ S+ + +    +LT
Sbjct: 223 STTTSVINYIGASTLESSSLTNTVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLT 282

Query: 376 THPNASTGPS 405
           +   +S+G S
Sbjct: 283 SSSTSSSGSS 292


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 174 GIEVSYNAAGVLVHMASDGPDAWCIDDPPRELVLNRV 284
           G+    N   + +H+  +   AW + +  ++LVL R+
Sbjct: 221 GLITIINGVFIFIHIPDEPSKAWFLSEKEKDLVLKRL 257


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 519 LIKKLAWTVIGNC 557
           LIK L WT +GNC
Sbjct: 651 LIKNLIWTKVGNC 663


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 355 SIGSNER*LIFRSAWRSQRSTAAATRFRTSSL 260
           ++ +++R LI  + WR    +  ATR RT  L
Sbjct: 563 AVRNHKRGLIMDTTWRDAHQSLLATRVRTIDL 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,025
Number of Sequences: 5004
Number of extensions: 57437
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)