Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L02
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 33 0.22
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606... 31 0.66
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 29 2.7
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 29 3.5
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524 29 3.5
07_03_0476 - 18547223-18548187,18548743-18549958 29 3.5
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 29 3.5
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 28 4.6
04_02_0033 - 8997041-8997754 28 6.1
02_03_0027 + 14065720-14066328 28 6.1
12_02_0584 + 20819822-20820970,20821394-20821618,20821776-208219... 27 8.1
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 27 8.1
04_04_0248 - 23891684-23892064 27 8.1
04_04_0157 + 23165638-23166633 27 8.1
01_05_0062 + 17755460-17755522,17756878-17756953,17757074-177571... 27 8.1
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 27 8.1
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 348 PILGLLRAYHTPQCQHWAVWALANLTTVYPEKYCSLVEAEGGLKLLNDLLVHPAPYHLIK 527
PI L + + + AVWAL N+ P K LV A GGL L L A +++
Sbjct: 167 PIFVKLLSSPSEDVREQAVWALGNVAGDSP-KCRDLVLASGGLYPLLQQLNEHAKLSMLR 225
Query: 528 KLAWTVIGNC 557
WT+ C
Sbjct: 226 NATWTLSNFC 235
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/91 (23%), Positives = 43/91 (47%)
Frame = +3
Query: 273 LNRVAAAVERWDLHAERNINYRSFEPILGLLRAYHTPQCQHWAVWALANLTTVYPEKYCS 452
L V V D+ + I++++ +L LL H + A W ++N+T E+ +
Sbjct: 311 LRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQA 370
Query: 453 LVEAEGGLKLLNDLLVHPAPYHLIKKLAWTV 545
++ A L++ L+ A + + K+ AW +
Sbjct: 371 VINANIIAPLVH--LLQTAEFDIKKEAAWAI 399
>01_05_0162 +
18759647-18759663,18760128-18760131,18760270-18760617,
18760801-18761016,18763367-18763435,18763560-18764209,
18764993-18765089,18765170-18765223,18765305-18765435,
18766818-18767008,18767937-18768574
Length = 804
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 EPILGLLRAYHTPQCQHWAVWALANLTTVYPEKYCSLVEAEGGLKLLNDLLVHP-APYHL 521
+P+L LL P + AV+AL L+ C ++ +GGLKLL D++ P P
Sbjct: 408 KPLLQLLNHTDVP-VRKAAVYALEKLSV--SSIVCEQIKTDGGLKLLADIVKDPNTPVEQ 464
Query: 522 IKKL 533
++K+
Sbjct: 465 LEKI 468
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 319 SAWRSQRSTAAATRFRTSSLGGSSMHQASGPSEAMW 212
SAWR RS F S+GG++ + P A W
Sbjct: 515 SAWRRARSPCDGGSFGWRSIGGAARPATAKPGTAQW 550
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 214 TWPRMAQTLGALTIR-PGNLS*TVSPPQSNVGTSTPSGISITVR 342
TW + ++ ++ P NLS TVS P++ G PSG ++ R
Sbjct: 1580 TWDKQLESWVKTSLFVPKNLSPTVSSPKTTTGLELPSGGHVSCR 1623
>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
Length = 652
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +1
Query: 283 SPPQSNVGTSTPSGISI---TVRSNRYWACYALTTHPNASTGPSGHWRTSPPF 432
SP N T SG I T+ S R +C H A T P W ++PP+
Sbjct: 345 SPRPQNSITHPHSGSEIFHHTLSSQRTNSCSPSAGHNGAPTAPLQSWPSAPPY 397
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 385 NASTGPSGHWRTSPPFTRKNIAA 453
NASTGPSG R PP TR A
Sbjct: 325 NASTGPSGTPRPGPPPTRTGCQA 347
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = -1
Query: 210 PTHRPRY---NSPLYH-----HWRIQVTHKRLVQTIYPSTST*GQ*LQPHCPGG 73
PT R Y NSP H H+ I+ TH+RL+ +YP+ T +Q P G
Sbjct: 372 PTKRRVYCVLNSPHVHKDSRFHFEIR-THQRLIDIMYPTAQTIDSLMQLQLPAG 424
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 399 AVWALANLTTVYPEKYCSLVEAEGGLKLLNDLLVH 503
AVWA++N T+ + ++G +K L DLLVH
Sbjct: 389 AVWAISNATSGGTFNQIEYLVSQGCIKPLCDLLVH 423
>04_02_0033 - 8997041-8997754
Length = 237
Score = 27.9 bits (59), Expect = 6.1
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Frame = -1
Query: 243 TKRLGHPR-PCGPTHRPRYNSPLYHHWRIQVTHKRLVQTIYPSTST*GQ*LQPHC----- 82
T+RL + P +Y LY R +V HK T PST G P C
Sbjct: 120 TRRLFQEQVKAAPLPTEQYMGTLYTKARDEVLHKYTTPTATPSTPN-G---DPFCIRGVR 175
Query: 81 -PGGPSYYGAILLYPENSSDMRGSIPCR 1
PGG YG LL P S+ G+ R
Sbjct: 176 TPGGG--YGKCLLLPLTPSEKEGATESR 201
>02_03_0027 + 14065720-14066328
Length = 202
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 319 SAWRSQRSTAAATRFRTSSLGGSSMHQASGPSEAMW 212
S WRS RS +AAT R +S GG S + A W
Sbjct: 11 SGWRS-RSASAATWRRRASGGGEVWENGSSRTTANW 45
>12_02_0584 +
20819822-20820970,20821394-20821618,20821776-20821907,
20822511-20822534
Length = 509
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 358 PSIGSNER*LIFRSAWRSQRSTAAATRFRTSSLGGSSMHQASGPSE 221
P + E +FRS ++TAA +R+SS G S H+ P +
Sbjct: 102 PDVKDLEINFVFRSVVGDDQTTAAGRYYRSSSRFGLSRHRRRLPMD 147
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 6 MEYFLACLKNF-PDKEELLRNMMGLLGNVAEVIDLR 110
+E CL++ + +EL+ NM+ L N+A V+DLR
Sbjct: 237 LETVFQCLEDQNTEDDELITNMLETLVNLAPVLDLR 272
>04_04_0248 - 23891684-23892064
Length = 126
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 310 RSQRSTAAATRFRTSSLGGSSMHQASGPSEAMWTNTPAAL 191
R Q AAATRFR+++ S M A+ + M AA+
Sbjct: 34 RMQSVAAAATRFRSAAAAASRMRLAAAAATRMRPAAAAAM 73
>04_04_0157 + 23165638-23166633
Length = 331
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 347 TDTGPVTRLPHTPMPALGRLGIGEPHHRLP 436
T T P TR P TP+ L L P LP
Sbjct: 31 TSTTPATRAPATPVAVLWDLAASRPPSTLP 60
>01_05_0062 +
17755460-17755522,17756878-17756953,17757074-17757145,
17757274-17757361,17757793-17758033,17759461-17759576,
17759804-17760021,17760210-17760241,17760338-17760440,
17760531-17760805
Length = 427
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 346 NRYWACYALTTHPNASTGP--SGHWRTSPPFTRKNI 447
N+Y A Y PNA+T P S W +P + R +
Sbjct: 262 NQYTAYYVRDQQPNATTLPSYSSDWHAAPIYERDGV 297
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 327 INYRSFEPILGLLRAYHTPQCQHWAVWALANLTTVYPEKYCSLVEAEGGLKLLNDLLVHP 506
IN P++ LL+ + A WA++N T+ + +EG +K L DLL+ P
Sbjct: 366 INAGIIGPLVNLLQTAEF-DIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,912
Number of Sequences: 37544
Number of extensions: 450084
Number of successful extensions: 1209
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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