Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L02
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15433| Best HMM Match : Arm (HMM E-Value=9.7)                      121   5e-28
SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)              34   0.096
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_19084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_15097| Best HMM Match : p450 (HMM E-Value=0)                        28   4.8  
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_53661| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.2)             27   8.3  

>SB_15433| Best HMM Match : Arm (HMM E-Value=9.7)
          Length = 237

 Score =  121 bits (291), Expect = 5e-28
 Identities = 62/120 (51%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
 Frame = +3

Query: 78  LGNVAEVIDLRSKLMDKLFVLVFYELLESSSDGIEVSYNAAGVLVHMASDGPDAWCIDDP 257
           +GNV+EV  LR +LM   +  VFYELL+S ++ +EVSYNAAG+L H+ASDGP AW  +  
Sbjct: 30  VGNVSEVDYLRPQLM--AYAEVFYELLDSVNE-LEVSYNAAGILCHLASDGPTAWTAETM 86

Query: 258 P--RELVLNRVAAAVERWDLHAERNINYRSFEPILGLLRAYHTPQCQHWAVWALANLTTV 431
              R   + ++   VE+WD+ A R ++YRSF PIL L+  Y TP  QHWA WALANL  V
Sbjct: 87  SLSRGQAMRKLIDCVEKWDIGATRQMSYRSFGPILRLIPKYETPAIQHWATWALANLCNV 146


>SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)
          Length = 398

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
 Frame = +1

Query: 196 RPVCWSTWPRMAQTLGALTIRPGNLS*TVS-PPQSNVGTSTPSGISITVRSNRYWACYAL 372
           RP      P   Q LG + IRP  L    + PP   +  + P  + + +   R   C + 
Sbjct: 168 RPQVLGQVPIRPQALGQVPIRPQALGQVPTRPPALGLVPARPQALDLVLARTRSSPCSSP 227

Query: 373 TTHPNASTGPSGHWRTSPPFTRKNIAA*WRLKAVSNYL 486
            T P+  + P     T   FT   +A   R+ A   Y+
Sbjct: 228 GTRPSLCSSPDTRTTTRSFFTEHQVACLQRVFANRRYV 265


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 277 TVSPPQSNVGTSTPSGISITVRSNRYWACYALTTHPNASTGPSGHWRTSPPFT 435
           TV+ P  N  T+TP+  + T  +      YA TT PN +T       TSP  T
Sbjct: 106 TVTAP--NATTTTPTATTTTTTTTTTTTPYATTTTPNTTTTTPNTTTTSPNAT 156


>SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
 Frame = +1

Query: 220 PRMAQTLGALTIRPGNLS*TVSPPQSNVGTSTPSGISITVR----------SNRYWACYA 369
           P +   LG     P   S T      + GT TP+G S T R          +NRY  C  
Sbjct: 7   PGLRHALGCRPHTPNGTSHTQRVFTHSTGTHTPNGASPTQRILTHPTGTHTANRYSHCQR 66

Query: 370 LTTHPNASTGPSGHWRTSPPFT 435
           + TH   +  P+G   T    T
Sbjct: 67  VLTHQTGTHTPNGASHTKQVLT 88


>SB_19084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 367 ALTTHPNASTGPSGHWRTSPPFTRKNIAA*WRLKAVSNYLMTYLY 501
           AL     AS G +GH    PP +R+  A  W +KA    L   +Y
Sbjct: 184 ALGARKAASVGKAGHKMNKPPLSRQVHAVLWVIKANDVRLANEMY 228


>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1310

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 6   MEYFLACLKNFPDKEELLRN 65
           + +F+ACL NFPD ++ ++N
Sbjct: 756 LRWFIACLVNFPDVQKKIQN 775


>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = +3

Query: 273  LNRVAAAVERWDLHAERNINYRSFEPILGLLRAYHTPQCQHWAVWALANLTTVYPEKYCS 452
            L  V   V   D   +  +N+ +     GLL  +H  + +  AVW L+N+T     +   
Sbjct: 865  LRAVGNIVTGTDEQTQVVLNHGALSHFTGLL-THHKEKIKKEAVWFLSNITAGNQSQVQE 923

Query: 453  LVEAEGGLKLLNDLLVHPAPYHLIKKLAWTV 545
            +++A  GL  L    +    +   K+ AW +
Sbjct: 924  VIDA--GLIPLIIQTLETGEFQTQKEAAWAI 952


>SB_53661| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.2)
          Length = 256

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = -3

Query: 328 IFRSAWRSQRSTAAATRFRT 269
           +FR+ WR++RSTA+++ + +
Sbjct: 136 VFRTGWRTRRSTASSSEYHS 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,575,786
Number of Sequences: 59808
Number of extensions: 464396
Number of successful extensions: 1254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)