Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L01
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 38 0.004
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.004
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 29 2.0
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.6
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 3.4
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 28 6.0
12_02_0292 + 16979550-16980662,16983249-16983731 27 8.0
05_03_0191 - 9521496-9521921 27 8.0
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 38.3 bits (85), Expect = 0.004
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 1/157 (0%)
Frame = +2
Query: 8 APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHA 184
AP+Y ++D +A + W+ G P KLV+GI GR+W L + D G P A
Sbjct: 249 APLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA 305
Query: 185 DEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGE 364
G + G+++Y EI L K + +D ++ Y +
Sbjct: 306 ---GTKQRKSNQIGVIAYAEIEEYL-------KSQSVFVTHD-NQSVADYFY-------S 347
Query: 365 GGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 475
G WVS++ K +V L G + +S DD
Sbjct: 348 GDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTISFDD 384
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 38.3 bits (85), Expect = 0.004
Identities = 36/158 (22%), Positives = 64/158 (40%)
Frame = +2
Query: 2 YTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIH 181
+ AP+Y +R +A + W+ G P K+V+GI GR+W L + + P+
Sbjct: 248 FDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVV 304
Query: 182 ADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXG 361
A + G + G +SY E+ L G R + ++ S +Y
Sbjct: 305 AAGPKQRG--SNATGAMSYAEV-QWLAATATRGSRAVITAYDNAS--VASYV-------S 352
Query: 362 EGGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 475
G WV+++ K ++ L G + ++ DD
Sbjct: 353 VGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDD 390
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/93 (24%), Positives = 37/93 (39%)
Frame = +2
Query: 47 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG 226
N + +IN+W+ T G + + S + G A E G GP ++
Sbjct: 508 NGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCD 567
Query: 227 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRF 325
+ SY + LI +G+RP L+ P F
Sbjct: 568 IYSYGVLLLVLI----SGRRP-LQVTASPMSEF 595
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 101 LVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAK 256
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 36 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 146
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 453 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 334
M T P +A A GS +T PPSP GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 94 PQTCPWYQHHWTYVEARFR 150
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 82 WCAYPQTCPWYQHHWTYVEARFR 150
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,586
Number of Sequences: 37544
Number of extensions: 388264
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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