Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K23
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.32 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.32 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = -1

Query: 575 AEDSSNLF*RRLGRYNTTLFLYPTFSRT--SLAEECPNVTSSLILSAVLRKSPLRSDSFS 402
           AE   NLF   +  +N  L  YP   RT  S+A E  N           R+  L S+S +
Sbjct: 537 AETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKT 596

Query: 401 -KKPMTTTSSLAVNASKSAKVSRSLEL 324
               +   +  A +AS S +   S+EL
Sbjct: 597 INAVVNALAEQAAHASASEESVHSMEL 623


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = -1

Query: 575 AEDSSNLF*RRLGRYNTTLFLYPTFSRT--SLAEECPNVTSSLILSAVLRKSPLRSDSFS 402
           AE   NLF   +  +N  L  YP   RT  S+A E  N           R+  L S+S +
Sbjct: 505 AETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKT 564

Query: 401 -KKPMTTTSSLAVNASKSAKVSRSLEL 324
               +   +  A +AS S +   S+EL
Sbjct: 565 INAVVNALAEQAAHASASEESVHSMEL 591


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 YPTLKIFRKGELSSDYNGPRESNGIVKY 303
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 562 QTCSEDAWDGIIRHCSCIQPS 500
           Q   ED W+ I R  S  QPS
Sbjct: 15  QVYGEDRWEEIRRQASVEQPS 35


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 287 MALSSTCVPKLDPALEIYLLWLTLKHSP 370
           ++++  C  +L+P L IY L + + H P
Sbjct: 110 LSVAVYCRDRLNPNLFIYALSVAILHRP 137


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 385 VVIGFFEKESDLKGDFLKTADKMREEV 465
           +VIG FE E      F   ADK  + +
Sbjct: 54  IVIGGFEIEKSEDDSFNNQADKSEKRI 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,640
Number of Sequences: 438
Number of extensions: 2900
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)