Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K22
(276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0219 + 15822050-15824896 29 0.70
03_05_0517 - 25118232-25118730,25119002-25119273 28 0.93
03_02_0269 + 7001891-7002212,7003598-7004037 28 0.93
12_02_0216 + 15804110-15804284,15804341-15804351 27 2.8
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826... 27 2.8
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 26 3.7
07_01_0601 + 4464745-4465010,4465274-4466582 26 3.7
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 26 3.7
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 26 5.0
04_01_0072 - 784922-785567,785673-786406 26 5.0
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 26 5.0
12_01_0382 + 2995263-2995673 25 6.5
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 25 6.5
04_04_0935 - 29509135-29511732 25 6.5
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 25 6.5
02_01_0406 - 2958933-2962076 25 6.5
04_01_0536 - 6965343-6965537,6966407-6966595 25 8.7
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 25 8.7
>12_02_0219 + 15822050-15824896
Length = 948
Score = 28.7 bits (61), Expect = 0.70
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 3 DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFHRTAIV 104
D D +R+ ++ C F+ P WPWL + T ++
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVI 303
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 128 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 238
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 0.93
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 263 SHHGREGXRIAWVDNWDD*NRR 198
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 86 PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 199
P+ +H V FF+ SN SGNY + G F
Sbjct: 15 PAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>03_02_0721 -
10677286-10678018,10679293-10679373,10682516-10682645,
10682969-10683101
Length = 358
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 80 RVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 193
R SD V+ +P+ SQP+NG SG GP
Sbjct: 210 RAQSDEARSGSVVVDPEEPSSQPNNGSSGGGGGTPDGP 247
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +2
Query: 131 PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 229
P FS P+ P+G ++E ++ P F N PN PP
Sbjct: 875 PGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP 913
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 101 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 196
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 259 TTGERVVVSLGWIIGMIEIDERRSSAYGFIISAR 158
+TG +V + L W++G E R +A G++ +R
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSR 266
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 NSDHVVIANPDPFFSQPSNGPSGNYEPIS-TGPAFVDFNHPNYPP 229
N HV P P +S P G Y P G V N P YPP
Sbjct: 357 NEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLN-PYYPP 400
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 134 FFSQPSNGP--SGNYEPISTGPAFVD 205
FFS+PS GP SGN++ + +D
Sbjct: 66 FFSRPSKGPTVSGNFDYLPCSSCIID 91
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 12 DTIRQ*KLSC-FSSSPYWPWLPQTEFHRTAIV 104
D R+ ++ C F P WPWL T T ++
Sbjct: 369 DPSRKHEMHCRFEKKPPWPWLAITSSFGTLVI 400
>12_01_0382 + 2995263-2995673
Length = 136
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 140 SQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPLARGGK 265
S P SGNY P+ + P PLA+GG+
Sbjct: 57 SSPPPPASGNYNPVLSPPKGTGSGSVGGSSSSPSAPLAKGGQ 98
>11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Frame = +2
Query: 131 PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 229
P FS P+ P G ++E ++ P F N PN PP
Sbjct: 932 PGFSAPARVPPGFSSGFSSHEGLNPPPGFSSHNGPNPPP 970
>04_04_0935 - 29509135-29511732
Length = 865
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -3
Query: 97 AVRWNSVCGSHGQYGEEEKHESFHCRIVSE 8
A+ WN++ G++ Q+G EE + ++S+
Sbjct: 468 AITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 128 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPL 250
+PF + S G S S G + + P+ PP + PL
Sbjct: 298 NPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPL 338
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 116 IANPDP-FFSQPS-NGPSGNYEPISTGPAFVDFNHPNY 223
IA+ DP F P NGPS Y ++ P ++ +H N+
Sbjct: 528 IAHLDPGAFELPVYNGPSFQYRTLTGFPTLLNLSHNNF 565
>04_01_0536 - 6965343-6965537,6966407-6966595
Length = 127
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 152 NGPSGNYEPISTG 190
NGP+GNYE I G
Sbjct: 102 NGPTGNYEGIGAG 114
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 119 ANPDPFF-SQPSNGPSGNYEPIST 187
++P PF S PS+G SGNY + T
Sbjct: 477 SSPSPFAPSGPSSGGSGNYGRLPT 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,741
Number of Sequences: 37544
Number of extensions: 142052
Number of successful extensions: 360
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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