Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K22
         (276 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   2.3  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   2.3  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   2.3  
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_32279| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             25   7.2  
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)                 25   7.2  
SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)               25   7.2  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   25   7.2  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              25   7.2  
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)         25   9.5  
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         25   9.5  
SB_38200| Best HMM Match : NCD3G (HMM E-Value=3.3)                     25   9.5  
SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4)                      25   9.5  
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   25   9.5  

>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 113 VIANPDPFFSQP-SNGPSGNYEPISTG 190
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 113 VIANPDPFFSQP-SNGPSGNYEPISTG 190
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 113 VIANPDPFFSQP-SNGPSGNYEPISTG 190
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 200 VDFNHPNYPPKRYD 241
           VD NHPNY P+ Y+
Sbjct: 32  VDLNHPNYLPETYN 45


>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 83  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 238
           +P DGN     IAN D     PSN P  ++  +    A V+     +PP  Y
Sbjct: 87  IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAY 133


>SB_32279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 19  FDNESFRVFLLRRIGHGCRKQSSIG 93
           F N+SF +F+  +IGH  R +  IG
Sbjct: 187 FTNDSFPLFVTWKIGHDRRLRGCIG 211


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 83  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 238
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 83  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 238
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80


>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +2

Query: 158 PSGNYEPISTGPAFV-DFN--HPNYPPKR 235
           PS  + P+STG +FV D N   P  PP+R
Sbjct: 843 PSAGFTPLSTGLSFVFDENIPPPPVPPRR 871


>SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 83  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 238
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80


>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
          Length = 769

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 185 TGPAFVDFNHPNYPPKR 235
           T  AF D  +PN+PP+R
Sbjct: 114 TNEAFFDLLNPNFPPER 130


>SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)
          Length = 367

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -3

Query: 217 GMIEIDERRSSAYGFIISARTV*WLREEXXXXXXXXXVTIAVRWNSVCGSHGQYGEEEKH 38
           G+I ID + SS +  +  +R    LR+           T+  +    C   G+Y  +EK+
Sbjct: 298 GLISIDGKMSSLFLLMFPSRLELKLRKWTPVSIHIEAATLRRQKEKFCHMKGRYLLDEKN 357

Query: 37  E 35
           E
Sbjct: 358 E 358


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 83   VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 238
            +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y
Sbjct: 1217 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 1264


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 83  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 238
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80


>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
          Length = 203

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +2

Query: 131 PFFSQPSNGPSGNY---EPISTGPAFVDFNHPNYPP 229
           P F   S G +G +         PAFV+F   NYPP
Sbjct: 58  PSFGAESGGTAGEWFWRYWHDGNPAFVNFMKKNYPP 93


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +2

Query: 92  DGNSDHVVIANPDPFFSQPSNGPSGN--YEPISTGPAFVDFN-HPNYPPK 232
           D    H ++   +  + Q     +GN  Y  I      VD N HP YPPK
Sbjct: 41  DNTIFHRIVKGGENIYGQSGFKVTGNTIYNMIKMADMEVDDNDHPLYPPK 90


>SB_38200| Best HMM Match : NCD3G (HMM E-Value=3.3)
          Length = 42

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 88 WNSVCGSHGQYGEEEKHESFHC 23
          W+ +  S G YG+EEK     C
Sbjct: 18 WDCILCSAGTYGDEEKENCVTC 39


>SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4)
          Length = 159

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 152 NGPSGNYEPISTGPAFVDFNHPNYPP 229
           NGP   Y P++ GP +   N P YPP
Sbjct: 24  NGPV--YPPVN-GPVYPPVNKPVYPP 46


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 83   VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 238
            +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y
Sbjct: 1811 IPEDGNGDAAYIVNLD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 1858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,906
Number of Sequences: 59808
Number of extensions: 158359
Number of successful extensions: 465
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 68
effective length of database: 12,754,513
effective search space used: 293353799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)