Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K22
(276 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 30 0.19
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 1.0
At5g25580.1 68418.m03044 expressed protein 27 1.3
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 27 1.3
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 27 1.3
At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containi... 26 3.1
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 26 4.1
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ... 25 5.4
At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containi... 25 5.4
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ... 25 7.1
At4g15060.1 68417.m02314 F-box protein-related contains weak sim... 25 7.1
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C... 25 7.1
At3g12060.1 68416.m01500 expressed protein similar to hypothetic... 25 7.1
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 25 9.4
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ... 25 9.4
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 25 9.4
At5g04540.1 68418.m00454 expressed protein 25 9.4
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 25 9.4
At1g15940.1 68414.m01913 expressed protein similar To androgen-i... 25 9.4
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 30.3 bits (65), Expect = 0.19
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 113 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPLARGG 262
++A P P+ P+ GP P+S+ PA N+P Y P GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 125 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDXPLAR 256
P P S P N P ++ P + P+ +N P PP YD P R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402
>At5g25580.1 68418.m03044 expressed protein
Length = 405
Score = 27.5 bits (58), Expect = 1.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 39 CFSSSPYWPWLPQTEFHRT 95
C +P+WPW+ + E H T
Sbjct: 119 CKKLAPWWPWIAKGEIHIT 137
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 146 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDXP 247
PS+ PS ++ P TGP+ + HP ++ P D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 122 NPDPFFSQPSNGPSGNYEPISTGP 193
NP+P++S P + P+ + S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 9 SDTIRQ*KLSCFSSSPYWPWLP 74
S I + + SC SSP+ PW+P
Sbjct: 96 SKIIEEKRYSCIISSPFTPWVP 117
>At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 794
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 88 WNSVCGSHGQYGEEEKHESFHCRIV 14
WNS+ G++ Q+G EK SF +I+
Sbjct: 572 WNSMLGAYSQHGMVEKALSFFEQIL 596
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 122 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 229
+P P S PS+ P + P S P + + P PP
Sbjct: 37 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 72
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 122 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 229
+P P S PS+ P + P S P + + P PP
Sbjct: 86 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 121
>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 843
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 187 WTGVRRFQSSQLSTQAIRXPSRPWWE 264
W G RR Q S ++ + PS PW++
Sbjct: 720 WEGKRRDQYSPSTSSSEITPSNPWFK 745
>At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 731
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 94 VRWNSVCGSHGQYGEEEKHESFHCRIVS 11
+ WNS+ +G +G EK S R++S
Sbjct: 501 ISWNSIIKGYGMHGFAEKALSMFDRMIS 528
>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
[Arabidopsis thaliana]; contains Pfam PF00067:
Cytochrome P450
Length = 399
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 164 GNYEPISTGPAFVDFNHPNYPPKRYDXPLA 253
G+Y I G F+ + + ++ P++YD PLA
Sbjct: 363 GDYT-IPAGWIFMGYPYVHFNPEKYDDPLA 391
>At4g15060.1 68417.m02314 F-box protein-related contains weak
similarity to F-box domain Pfam:PF00646
Length = 572
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 60 WPWLPQTEFHRT 95
W WLP+ E+H T
Sbjct: 208 WMWLPKLEYHNT 219
>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
type) family protein identical to superman protein
GB:S60325 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +2
Query: 86 PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNY 223
PS ++ NP+ +S +N P ++ P++ P + P Y
Sbjct: 82 PSSSSTPSPPYPNPNYSYSTMANSPPPHHSPLTLFPTLSPPSSPRY 127
>At3g12060.1 68416.m01500 expressed protein similar to hypothetical
protein GB:CAB82953 GI:7340710 from [Arabidopsis
thaliana]
Length = 556
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 179 ISTGPAFVDFNHPNYPPKRYDXPLARGGK 265
IS G VDF + PK+ P GGK
Sbjct: 227 ISNGRPDVDFQKLKWKPKQCSLPRLNGGK 255
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 13 TLFDNESFRVFLLRRIGHGCRK 78
T+FD FL+R IG GC K
Sbjct: 104 TVFDVHDEAEFLIRVIGSGCSK 125
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase) [Alfalfa] SWISS-PROT:P04078
Length = 356
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 125 PDPFFSQPSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDXPLARG 259
P P + PS P NY+ STG A D + YP + P RG
Sbjct: 41 PGPV-TDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRG 85
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 110 VVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 217
VV+ NP+P+F +G S +Y P+S G A DF P
Sbjct: 250 VVLPNPNPYFETILDGFSCSY-PVS-GDA--DFTKP 281
>At5g04540.1 68418.m00454 expressed protein
Length = 833
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 182 STGPAFVDFNHPNYPPKRYDXPL 250
S+G + V N P Y P RYD PL
Sbjct: 610 SSGTSHVHCN-PFYDPSRYDGPL 631
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Frame = +2
Query: 104 DHVVIANPDPFFSQP------SNGPSGNYEPISTGP 193
D +A P QP +NGP N +P+S GP
Sbjct: 252 DRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGP 287
>At1g15940.1 68414.m01913 expressed protein similar To
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]
Length = 990
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 119 ANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPK 232
A +P +NG N EP + G PN PK
Sbjct: 798 AAKEPTAESKTNGEEPNAEPETDGKEHKSLKEPNAEPK 835
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,100,480
Number of Sequences: 28952
Number of extensions: 110334
Number of successful extensions: 336
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -