Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K21
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    27   0.44 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    24   2.3  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    23   4.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    23   5.4  

>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 88  SRNSTESSVLTGSHNPGAKMSANTNKLK 5
           S N  +SS L   H+P + M +NT KL+
Sbjct: 86  SINDLDSSKLRRPHHPNSIMGSNTGKLR 113


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 88  SRNSTESSVLTGSHNPGAKMSANTNK 11
           S N T    +TGS+N G  MS   N+
Sbjct: 348 SYNDTPQQSVTGSYNSGETMSTYLNQ 373


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = -2

Query: 72  NH-QFSLGHITLGQK 31
           NH QF  GHIT+GQ+
Sbjct: 205 NHNQFIAGHITMGQE 219


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 79  STESSVLTGSHNPGAKMSANTNK 11
           +T+SS ++ S NP    ++NTN+
Sbjct: 116 TTQSSPISTSFNPQLPSNSNTNR 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,241
Number of Sequences: 5004
Number of extensions: 2072
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 11
effective length of database: 2,307,434
effective search space used: 41533812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)