Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K21
         (91 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical...    26   3.1  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    26   3.1  
Z81491-4|CAB04017.1|  252|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25b protein.
          Length = 323

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 88  SRNSTESSVLTGSHNPGAKMSANT 17
           S NS  ++  T SHNPGA  +  T
Sbjct: 268 SPNSLSTTTTTTSHNPGASATTTT 291


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 88  SRNSTESSVLTGSHNPGAKMSANT 17
           S NS  ++  T SHNPGA  +  T
Sbjct: 585 SPNSLSTTTTTTSHNPGASATTTT 608


>Z81491-4|CAB04017.1|  252|Caenorhabditis elegans Hypothetical
           protein D1086.4 protein.
          Length = 252

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 24  ALIFAPGLCDPVRTDDSVEF 83
           ++ FAPG+ + + TDD +EF
Sbjct: 165 SVAFAPGVYEDLSTDDDLEF 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,895
Number of Sequences: 27780
Number of extensions: 10626
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 12,740,198
effective HSP length: 11
effective length of database: 12,434,618
effective search space used: 223823124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)