Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K20
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        51   1e-07
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.56 
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    29   0.74 
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    27   1.7  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   2.3  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   4.0  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 30/88 (34%), Positives = 47/88 (53%)
 Frame = +3

Query: 3    DFGVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRL 182
            D GVQIN+      ++  I IQG ++   +    I + +  L +     V+I    HR+L
Sbjct: 758  DLGVQINV------EEGHIRIQGIKKNVEETAARIKSQIEALIDDTILRVNIPNDFHRQL 811

Query: 183  IGLRGKNIRRIMDEFKVDIRFPKHGDDS 266
            IG  GK +RR+ ++F V +RFP+  D S
Sbjct: 812  IGSNGKYVRRLEEKFSVRVRFPREDDSS 839



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
 Frame = +3

Query: 12  VQINLPKRGEPDDD-----IITIQGYEEKAL-QAKDAIMAIVHQLDNQCKEEVDIDPRVH 173
           VQ +LPKR E   +     II I G  ++A+ + +  ++A+V+Q       +V IDP + 
Sbjct: 516 VQYHLPKREELQSNSNKTVIIEISGKSQEAVREGRAKLLALVNQFPESKFYKVTIDPLLQ 575

Query: 174 RRLIGLRGKNIRRIMDEFKVDIRFPKHGDD 263
           R +IG +GKN++++ +E +V++   ++G++
Sbjct: 576 RYVIGSKGKNLQKLRNEHQVELLVGEYGEE 605



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 24/93 (25%), Positives = 44/93 (47%)
 Frame = +3

Query: 63   IQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIR 242
            ++G++E   +A  ++   + Q+   C   + I   +HRR+IG  G  I +I    +V I 
Sbjct: 1183 VRGHKENVEKAIASLEKSIKQVMENCIAYLGIPTNLHRRIIGSGGSIINKIRKIAQVKID 1242

Query: 243  FPKHGDDSVXGXITGDEDNVLDAKDHLLNLAEE 341
             P+   D +   + G    V+ AKD +    +E
Sbjct: 1243 VPRTPGDEIV-VVQGSRAGVVKAKDLIFERLQE 1274



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
 Frame = +3

Query: 6    FGVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLI 185
            F V+I++      +   ++++G +     A   I AI  ++ N  ++ + ID   HR LI
Sbjct: 912  FDVKIDIGDVSTEETTPVSVRGAKADVENAIKEISAIAEEVKNLVEKVIKIDREYHRYLI 971

Query: 186  GLRGKNIRRIMDEF-----KVD----IRFPKHGDDSVXGXIT--GDEDNVLDAKDHLLNL 332
            G  G  ++  + E      K +    I F     +     +   GD++ V   +  LL +
Sbjct: 972  GPNGSKLQNTIKECGGSTDKTETARLISFSNGNSEEERNSVVLRGDKEIVEALETRLLEI 1031

Query: 333  AEEYLQDVADRYQAP 377
             EE    V ++ + P
Sbjct: 1032 VEELKNQVEEKIEVP 1046



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
 Frame = +3

Query: 33   RGEPDDDIITIQGYEEKALQAKDAIMAIV-----HQLDNQCKEEVDIDPRVHRRLIGLRG 197
            R +  DD + I+G+ +   +    I  +V     H++ +   EE D   +  + +IG  G
Sbjct: 690  RPDSTDDDVYIRGFSKDVERVVSEIKQVVRDAKNHEILHSHVEEFDFPAQYSKNVIGKNG 749

Query: 198  KNIRRIMDEFKVDIRFPKHGDDSVXGXITGDEDNVLDAKDHLLNLAEE 341
             N+  + ++  V I   + G   + G     E+     K  +  L ++
Sbjct: 750  SNVSSLREDLGVQINV-EEGHIRIQGIKKNVEETAARIKSQIEALIDD 796



 Score = 29.5 bits (63), Expect = 0.43
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 12   VQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQ 137
            V+I++P+   P D+I+ +QG     ++AKD I   + +  NQ
Sbjct: 1239 VKIDVPRT--PGDEIVVVQGSRAGVVKAKDLIFERLQENQNQ 1278



 Score = 29.1 bits (62), Expect = 0.56
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 10/176 (5%)
 Frame = +3

Query: 15  QINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLR 194
           +IN+    +  +    IQG       A+  I+ ++ + + +    +     V   +IG  
Sbjct: 187 RINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRETKT---MPCPVFVVGAIIGTN 243

Query: 195 GKNIRRIMDEFKVDIRFPKHGDDSVXGXITGDEDNVLDAKDHLLNLAEEYLQDVADRYQA 374
           G+N++ IMD     I+ PK  + +        +D     K+   N A   L D+  +Y+ 
Sbjct: 244 GQNLKSIMDRTSTRIQIPKRNNTA----NESSDDAKKPEKEE--NSAASTLDDLEPQYEM 297

Query: 375 PAAPSLADF----------GSVLNENSSTGSVERTRIPERLLLLVLW*KGVRGSNV 512
                  DF           +++NE +S  +V  + I   L  L+   +G  G N+
Sbjct: 298 TTITIEGDFEGVELAQKDIEAIINERTSNTTVRISHISTELYSLL---RGPDGKNI 350


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 159 DPRVHRRLIGLRGKNIRRIM-DEFKVDIRF 245
           DP V R +I LRG NI  +M  +F +DI F
Sbjct: 410 DPSVCRSIIALRGYNIFGLMLKKFSIDIEF 439


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = -3

Query: 332 QVQEVILSIE----HVVFITRDXXTNAIITMF----RETYVHLELVHNTTYILSPQP 186
           ++Q VI+ IE    HV+ I     T  II  F    RE   +L +  +T Y + PQP
Sbjct: 394 RLQSVIVEIERMKHHVLVIGHRVITRIIIAYFLGCRREDIAYLNVPLHTVYCIEPQP 450


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 156 IDPRVHRRLIGLRGKNIRRIMDEFKVDIRF 245
           +   +H++LIG RG+ I+R+   +   I F
Sbjct: 585 VPEEIHKKLIGFRGEQIQRVTKLYNSYIEF 614


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = +3

Query: 201 NIRRIMDEFKVDIRFPKHGDDSVXGXITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAPA 380
           N  +  D FK +  F K  D  +   I   E   L  KD+  +L  EY  D++   Q  A
Sbjct: 354 NFEKYCDNFKKNY-FSKFKDSEITEDIVEKEYWKL-VKDNNTSLEVEYGADLSTLDQGSA 411

Query: 381 APSLA 395
            PSLA
Sbjct: 412 FPSLA 416


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 550  HGRELVCGSRVRCTLLPRTPFHHKTSNSRRSGIRVRSTL 434
            HG+ L   + +  T   RT   HK  N +   + ++ TL
Sbjct: 1104 HGQSLTHNNLIAVTPPSRTGVEHKEENKKYDNVNIQKTL 1142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,184
Number of Sequences: 5004
Number of extensions: 46057
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)