Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K20
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0288 + 16527666-16527837,16527915-16528132,16528491-165285...    35   0.047
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639...    30   1.3  
09_03_0041 + 11826788-11828002,11828101-11828563,11828668-118287...    30   1.8  
09_02_0154 + 5055946-5058721,5058754-5058770                           28   5.4  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    28   7.1  
05_04_0125 - 18241542-18242129                                         28   7.1  
01_01_0969 - 7655087-7655455                                           28   7.1  

>10_08_0288 +
           16527666-16527837,16527915-16528132,16528491-16528554,
           16528749-16528821,16529294-16529371,16529573-16529730,
           16530222-16530390,16530531-16530990,16531098-16531478,
           16531834-16532037,16532318-16532451,16532937-16533120
          Length = 764

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 39  EPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLR-GKNIRRI 215
           E DDD  T +G EE  +  +DA+    +Q  ++ K++    P+ H ++IG++  K++ + 
Sbjct: 521 EDDDDDDTTKG-EEDEIDEEDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEKT 579

Query: 216 MDEFKVDIRFPKHGDD 263
               K   R P+  DD
Sbjct: 580 SVSSKKSKRVPEIDDD 595


>03_05_0916 - 28762214-28762414,28763144-28763242,28763573-28763998,
            28764259-28764501,28764706-28764927,28765392-28765721,
            28767380-28767800,28768292-28768404,28769224-28769367,
            28769439-28769570,28769802-28770013,28770983-28771505
          Length = 1021

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +3

Query: 234  DIRFPKHGDDSVXGXITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAPAA 383
            D+RF   G DS      GD D+V D    +LN A E L    DR     A
Sbjct: 862  DVRFSPSGTDSGRSDGDGDGDDVSDGGPIMLNEALELLSQRWDRINGAQA 911


>09_03_0041 +
           11826788-11828002,11828101-11828563,11828668-11828798,
           11829227-11829577,11829723-11829879,11829968-11830260,
           11830367-11830426,11830530-11830619,11830774-11830857
          Length = 947

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +3

Query: 285 GDEDNVLDAKDHLLNLAEEYLQDVADRYQAPAAPSLADFGSVLNENSSTGSVER 446
           GDED  L +++  L+ + +   + ++ Y APAA S +   SVL+  SS G   R
Sbjct: 222 GDEDEDLGSEEETLSESSD--GEFSEDYAAPAANSSSMMDSVLDHVSSGGGFYR 273


>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 303 LDAKDHLLNLAEEYLQDVAD----RYQAPAAPSLADFGSVLNENSSTGSVERTRIPERLL 470
           L A  HL NLAE YLQ   D     +QA   P+L + G    +   +  +E   +P  L 
Sbjct: 801 LPAISHLSNLAELYLQKAYDGLLMTFQAGWFPNLRELGLADMDQLRSIDIEAGTMP-NLS 859

Query: 471 LLVL 482
           +LVL
Sbjct: 860 ILVL 863


>12_02_0318 -
           17457182-17462232,17462745-17462955,17463356-17463403,
           17466161-17466346
          Length = 1831

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 420 NSSTGSVERTRIPERLLLLVLW*KGVRGSNVHL 518
           N+S  SV      E  LLL+ W K +R SN+ L
Sbjct: 778 NASFPSVSSPLARENALLLLQWIKNIRSSNISL 810


>05_04_0125 - 18241542-18242129
          Length = 195

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 141 KEEVDIDPRVHRRLIGLRGK 200
           KE VD DP+V  RLIGL G+
Sbjct: 13  KEVVDGDPQVPSRLIGLHGE 32


>01_01_0969 - 7655087-7655455
          Length = 122

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 517 RCT-LLPRTPFHHKTSNSRRSGIRVRSTLPVLEFSFRTLPKSARDGAAGAW 368
           RC  LL R P   +   S ++ +   STL  L FS++        GAAG W
Sbjct: 51  RCLHLLERAPAGGQARASMKAAVWGLSTLLTLMFSYKVAAIMPLWGAAGVW 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,133
Number of Sequences: 37544
Number of extensions: 334009
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)