Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K20
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 81 6e-16
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1284| Best HMM Match : KH_1 (HMM E-Value=1.2e-07) 33 0.19
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35) 30 1.4
SB_9694| Best HMM Match : IclR (HMM E-Value=5) 30 1.8
SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_50528| Best HMM Match : Flavi_propep (HMM E-Value=8.5) 29 2.4
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 29 2.4
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.2
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1) 27 9.7
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_38744| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 81.4 bits (192), Expect = 6e-16
Identities = 38/82 (46%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Frame = +3
Query: 129 DNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIRFPK-HGDDSVXGXITGDEDNVL 305
++Q E+ IDPR+HRRLIG +G+ +R++M+++KVDIRFP+ + +D V I+G E +V
Sbjct: 1110 EDQVSVELTIDPRIHRRLIGAKGRAVRKLMEQYKVDIRFPRQNANDPV--VISGQEQDVE 1167
Query: 306 DAKDHLLNLAEEYLQDVADRYQ 371
+AK+ LL L EEY+Q V + +
Sbjct: 1168 EAKEQLLLLEEEYMQSVKEEIE 1189
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +3
Query: 51 DIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEFK 230
DII I G +E A AK ++ +V E++ I HR +IG +G N+R++MDEF
Sbjct: 893 DIIIITGKKESAEAAKIDLLDLV-----PVTEQMHIPFDYHRFVIGPKGSNVRKMMDEFS 947
Query: 231 VDIRFPKHGDDSVXGXITGDEDNV 302
V+I P D+S + G NV
Sbjct: 948 VNISIPPAKDESDSVSVIGPRANV 971
Score = 47.6 bits (108), Expect = 8e-06
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Frame = +3
Query: 9 GVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLD-NQCKEEVDIDPRVHRRLI 185
GV I P G D ++ I+G ++ +AK ++ + ++ + E+ P HR LI
Sbjct: 691 GVSIKFPPEGSNSDKVL-IRGPKDDVEKAKKQLLELTNEKELGSYTVEIRAKPEHHRFLI 749
Query: 186 GLRGKNIRRIMDEFKVDIRFPKHGD-DSVXGXITGDEDNVLDAKDHLL 326
G G +IR++ + I FP D D I G ++ V AKD LL
Sbjct: 750 GRGGASIRKVRENTGARIVFPAAKDEDKELITIIGKQEAVEAAKDELL 797
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 69 GYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIRFP 248
G +E A+ +M IV +L++ E I HR ++G +G N++ + KV I+FP
Sbjct: 804 GAKECVEGARQRVMEIVQELESMVTIECVIPQEFHRNIMGAKGANVQEVTARHKVQIKFP 863
Query: 249 KHGDDSVXGXITGDEDNV 302
+ GD +++
Sbjct: 864 DRSPAGEEPVVNGDGEHL 881
Score = 44.0 bits (99), Expect = 1e-04
Identities = 34/128 (26%), Positives = 71/128 (55%), Gaps = 12/128 (9%)
Frame = +3
Query: 3 DFGVQINLPKRGEPDDDIITI--QGYEEKALQAKDAIMAIVHQLDNQ------CKEEVDI 158
+F V I++P + D + I + E+A++A +A +A + + +N+ K +V +
Sbjct: 945 EFSVNISIPPAKDESDSVSVIGPRANVERAMKALEAKVAEI-EAENEDRALRSFKMDVKV 1003
Query: 159 DPRVHRRLIGLRGKNIRRIMDEFKVDIRFPKHG--DDS--VXGXITGDEDNVLDAKDHLL 326
D + H ++IG +G+ I I ++ V+I+FP ++S V G +TG + + A+D +L
Sbjct: 1004 DRQYHPKIIGRKGQVITNIRKQYDVNIQFPPQDAPEESADVIG-LTGYQHSCEAARDAIL 1062
Query: 327 NLAEEYLQ 350
+ +E ++
Sbjct: 1063 KIVKELVR 1070
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Frame = +3
Query: 9 GVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIG 188
GV + +P + D + IT++G ++K A+ + + ++ EV +HR +IG
Sbjct: 368 GVSVEMPP-SDSDSETITLRGEQDKL---GVALTQVYEKANSVVFAEVAAPRWLHRFIIG 423
Query: 189 LRGKNIRRIMDEF-KVDIRFPKHGDDSVXGXITGDEDNVLDAKDHLLNLAEEYLQDVA 359
RG+NIR++ + KV + F D+ + G + V A++ L E + +A
Sbjct: 424 RRGQNIRKVTQDLPKVHVEF---SDEKDSITLEGPPEQVESARESLEAFIRELIVSMA 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +3
Query: 147 EVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIRFPKHGDDSVXGXITGDEDNVLDAKDHLL 326
+V I + H+ +IG G I++I +E I P G DS ITG + V A++ +L
Sbjct: 591 DVPIFKQFHKNVIGRGGTTIKKIREETDTKIELPAEGSDSDVIIITGHKAQVEAAREKIL 650
Query: 327 NLAEE 341
+ E
Sbjct: 651 AIQNE 655
>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 48 DDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEF 227
D I + G + AK+ +MA++ ++ ++D+ H +IG G NI+++M +
Sbjct: 312 DPHIKVAGLPDSVRMAKEKVMAVLDTKSSRVTLKMDVSHTDHSHIIGKGGYNIKKVMQDT 371
Query: 228 KVDIRFP 248
I FP
Sbjct: 372 GCHIHFP 378
Score = 34.3 bits (75), Expect = 0.084
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 147 EVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIRFPKHGDDSVXGXI--TGDEDNVLDAKDH 320
++DI P+ H +IG G NI+ I + + FP G + +G ++V+ A+
Sbjct: 473 QIDIAPQHHLFIIGKNGANIKHITQQTGASVNFPDPNGTQRKGVVFLSGSVESVICARAQ 532
Query: 321 LLN 329
LL+
Sbjct: 533 LLD 535
>SB_1284| Best HMM Match : KH_1 (HMM E-Value=1.2e-07)
Length = 333
Score = 33.1 bits (72), Expect = 0.19
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 YEEKALQAKDAI---MAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIR 242
YE++ L +D + + +V N K + I VHR +IG +G R+I + I
Sbjct: 43 YEQEDLTYEDEVCDALNLVESTANGFKSSMGISCEVHRFIIGYKGNTKRQIEQDTNTRIS 102
Query: 243 FPKHGDDSVXGXITG-DEDNVLDAKDHLLNLAEE 341
P+ G ITG + VL A+ H +++ E
Sbjct: 103 IPRVGQTGDI-VITGQSKAEVLSAR-HKVDIVVE 134
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 42 PDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRI 215
P + I I+G EKA +A+ I IV + Q EE I ++IG G IR +
Sbjct: 108 PSERTIVIKGEREKARKAELIIKKIVAEQPRQLTEEYLIPQAACGKIIGRGGATIRHL 165
>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
Length = 1814
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 255 GDDSVXGXITGDED-NVLDA-KDHLLNLAEEYLQDVA-DRYQAPAAPSLADFGSVLNENS 425
G D V G GD D + L K H L+ E + VA + A+P LA F +
Sbjct: 57 GVDGVLGGEMGDLDVHFLHVVKKHFLSRVETGFKKVALIIVRISASPDLALFSDIQEITI 116
Query: 426 STGSVERTRIPERLLLLVLW*KGVR 500
+G+++ + E LLL + +G+R
Sbjct: 117 FSGNIDNMSVKENLLLPPVVARGIR 141
>SB_9694| Best HMM Match : IclR (HMM E-Value=5)
Length = 282
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 261 DSVXGXITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAPAAPSLADFGSVLNENSSTG 434
D+V D+DN ++ +H+ N+ E+ LQ + R L DF + + S G
Sbjct: 171 DNVSNQDDDDDDNDTESVEHIFNMVEDTLQSLTQRM---IKSELEDFELIADGGSCNG 225
>SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +3
Query: 21 NLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGK 200
N+P RG ++D + E+ + A D + L N K I PR+ LI L GK
Sbjct: 160 NIPLRGHTEEDS-NFKIILER-IAASDRTLG--DHLANARKNATYISPRIQNELIELCGK 215
Query: 201 NIRRIM 218
NIR +
Sbjct: 216 NIRNTL 221
>SB_50528| Best HMM Match : Flavi_propep (HMM E-Value=8.5)
Length = 358
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 237 IRFPKHGDDSVXGXITGDE----DNVLDAKDHLLNLAEEYLQDVADRYQAPAAPS 389
+RF +HGD+S +E N+L DHLLN + L+ D A A PS
Sbjct: 286 VRFARHGDESSIVVRDREEAAYLTNLLAGTDHLLNF--DVLRVCTDAIYAKAVPS 338
>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 117 VHQLDNQCKEEVDIDPRVHR-RLIGLRGKNIRRIMDEFKVDIRFPKHGDDSVXGXITG 287
++Q D K ++++D + + +G G N+ +I+ EF PK D+ + G ++G
Sbjct: 121 IYQKDEHLKLKMEVDSDNNEVKQLG-NGNNMEKILREFIKKKNMPKREDEKLQGNVSG 177
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -2
Query: 318 DP*HRARCLHHP*SXHXRYHHHV---SGNVCPP*TRP*YDVYSFPSTQSVFYEH 166
DP R HH H +HHH V PP T Y + +PS+ + + H
Sbjct: 127 DPTGNHRHYHHHYHHHHHHHHHFVQPPYQVPPPPTPQPYHPHPYPSSGPMHHRH 180
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 339 PRPGSRGDP*HRARCLHHP*SXHXRYHHH 253
P G GDP H A L + R+HHH
Sbjct: 258 PFVGDNGDPIHMAEALSQTNHLYHRHHHH 286
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 357 LRLASIPRPGSRGDP*HRARCLH 289
L LAS PGSRG P H+ R H
Sbjct: 55 LHLASTTAPGSRGKPNHKGRRRH 77
>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 147 EVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIRFPKHGDDSVXG----XITGDEDNVLDAK 314
E++ + RLIG +GKN++ I D+ IR V ++GD + A
Sbjct: 183 EIEFPQILCGRLIGRKGKNVKAISDQSGAKIRLIPQSPGEVSTHRIISLSGDSSQIKSAL 242
Query: 315 DHL 323
D +
Sbjct: 243 DSI 245
>SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)
Length = 234
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 343 TCKT*PIVTKRQPRRLSLTSVVF*TKTLVPAA 438
TC P++ KR P+RL++ +++F TLV +A
Sbjct: 76 TCCRRPVIRKR-PKRLAILAILFCLSTLVCSA 106
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 537 SCVEAVSGARCSHGPPFTTKPATAGVPVFAFAPR 436
+C + S +R + PP ++PATA PVF P+
Sbjct: 303 ACHSSPSISRPATAPPSISRPATAPPPVFRGLPQ 336
>SB_38744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/88 (20%), Positives = 34/88 (38%)
Frame = -3
Query: 401 EVSERRRGWRLVTIGYVLQVFLGQVQEVILSIEHVVFITRDXXTNAIITMFRETYVHLEL 222
+V E W +VT + + F+ + +++ +I +VFI + V
Sbjct: 254 QVYESFNDWEMVTSSVLGEFFVSNLPQLVATINPLVFICLTKDLRRFARSGCQCLVIRRR 313
Query: 221 VHNTTYILSPQPNQSSMNTGININFFFA 138
H+ + PN + +G N FA
Sbjct: 314 GHDRVTLTETYPNSTQYTSGYPSNGDFA 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,584
Number of Sequences: 59808
Number of extensions: 372728
Number of successful extensions: 1261
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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