Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K20
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138...    31   0.85 
At1g68790.1 68414.m07863 expressed protein                             31   0.85 
At1g41920.1 68414.m04842 hypothetical protein                          29   2.0  
At3g12970.1 68416.m01616 expressed protein                             29   2.6  
At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferas...    29   2.6  
At1g59810.1 68414.m06734 MADS-box family protein contains simila...    29   3.4  
At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ...    28   4.5  

>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 567

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 524 PCQVHVAPTDPLSPQNQQQQAFRYSRSLHAAGTRVFVQNTTEVSERRRGWRLVTI 360
           P   H  P+ P SP+   +  +R+ RS  AAG+R      +     R  W L+++
Sbjct: 8   PGSGHTTPSPPASPRRSPR--YRHGRSKAAAGSRFPTVQPSRTLAHRLSWILLSV 60


>At1g68790.1 68414.m07863 expressed protein
          Length = 1085

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +3

Query: 3    DFGVQINLPKRGEPDDDIITIQG--YEEKALQAKDAIMAIVHQLDNQCKEEVDID-PRVH 173
            D G+ + LP+  +PDD +  + G  +E  A +       I    +   + E+  D PR  
Sbjct: 797  DLGITVKLPESSQPDDSLDRVSGEDHEPSATEQSFTDSRIQEGPEGSLQSEMKSDKPRRG 856

Query: 174  RRLIGLRGKNIRRIMDEFKVDIRFPKHGD 260
            R     RGK++R      K   R  K  D
Sbjct: 857  RGRGRGRGKSVRGRSQATKAVSRDSKPSD 885


>At1g41920.1 68414.m04842 hypothetical protein
          Length = 496

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 61  LFKDTKRRLCKLKTPLWRSYINWITNAKKK 150
           L K TK++LCKL+   W S +N + +  KK
Sbjct: 351 LVKSTKQQLCKLRDDGWDSLVNEVFSFCKK 380


>At3g12970.1 68416.m01616 expressed protein
          Length = 381

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -1

Query: 550 HGRELVCGSRVRCTLLPRTPFHHKTSNSRRSGIRVRSTLPVLEFSFRTLPKS 395
           HG E    S    T  PR   HH    S  + +R+   L V   S R+ PKS
Sbjct: 284 HGLERSSSSPGNFTGGPRMKLHHGMPRSHSANVRITPVLNVPVSSLRSGPKS 335


>At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferase /
           xyloglucan alpha-(1,2)-fucosyltransferase (FUT1) (FT1)
           identical to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 558

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 537 SCVEAVSGARCSHGPPFTTKPATAGVPVFAFAPRCRY 427
           SC  A+S   C H PPF    A  G+      P  R+
Sbjct: 511 SCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRH 547


>At1g59810.1 68414.m06734 MADS-box family protein contains
           similarity to hypothetical proteins of [Arabidopsis
           thaliana]
          Length = 283

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 213 IMDEFKVDIRFPKHGDDSVXGXITGDEDNVLDAKDHLLNLAEEYLQD-VADRYQ 371
           + DE    +R  ++ +++V    + D DN     DHL+ L  +YLQ+  A+ YQ
Sbjct: 185 VFDELAYVVRGSRNLNENVSKYESKDADNT--GLDHLVTLGGDYLQEAAAELYQ 236


>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
           (SPL1) identical to squamosa promoter binding
           protein-like 1 [Arabidopsis thaliana] GI:5931655;
           contains Pfam profile PF03110: SBP domain
          Length = 881

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 474 ATAGVPVFAFAPRCRY*SFRSEHYRSQRETARLALGNDRLRLASIPRPGSRGDP 313
           AT G  +  F  +C       E    +R   R   G+++ R  + P PG+ G+P
Sbjct: 137 ATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGNP 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,563
Number of Sequences: 28952
Number of extensions: 250034
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)