Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K18
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 32 0.38
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395... 32 0.38
01_01_0144 - 1316626-1316658,1317580-1318863 32 0.50
07_03_1390 + 26217623-26218370,26218435-26218934 31 0.88
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 31 0.88
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206 31 1.2
04_04_1360 + 32889597-32890343 30 2.0
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 29 2.7
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 29 3.5
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977... 28 8.2
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779... 28 8.2
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 32.3 bits (70), Expect = 0.38
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 169 WSIENNINHYKNETAVKIWILMKKQNWL 252
W + I+ Y N TA+ W++ K+ NW+
Sbjct: 44 WLVATLIDFYVNVTAISTWVIYKEVNWI 71
>05_05_0353 -
24338717-24338946,24339046-24339134,24339421-24339500,
24339768-24339902,24340231-24340461,24340540-24340634,
24340734-24340819,24341467-24341570,24341674-24341805,
24341883-24341999,24342170-24342229,24342779-24342820,
24342878-24342952,24343127-24343177,24343256-24343436,
24343548-24343594,24343710-24343775
Length = 606
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 112 YFHAREPNHVSKSITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPFSPLNPT 291
Y + EP ++KS T A + +N+N N + + ++ ++ + LL + PF L+P
Sbjct: 230 YAESTEPPMLAKSATRIAILGV-SNLNS-SNTRCINVSLMQQRGDSLLIMGSPFGILSPV 287
Query: 292 HQFEAV 309
H F ++
Sbjct: 288 HFFNSI 293
>01_01_0144 - 1316626-1316658,1317580-1318863
Length = 438
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 166 SWSIENNINHYKNETAV---KIWILMKKQNWLLPLSVPFSPLNPTHQFEAVIMFNVLYSA 336
+WS+ + H+K ET + IW LP +PFSPL + E IM+ VL
Sbjct: 303 TWSLSPDFKHWKEETTLTVGDIWASESFNQMGLPHVLPFSPLLGVN--EDGIMYAVLNHV 360
Query: 337 KD 342
K+
Sbjct: 361 KE 362
>07_03_1390 + 26217623-26218370,26218435-26218934
Length = 415
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 46 CDPVRTDDSVEFAKKQIDISLLYFHA--REPNHVSKSITISASWSIEN 183
C PV D + K+Q+ + LL + ++P+ SKS++ +A W +EN
Sbjct: 303 CMPVHAD--IIILKEQMRMQLLEYKLLRKKPSQDSKSVSTNADWKLEN 348
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 340 DYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 450
+YD F +TT + V D Y VL + I+R+D EG
Sbjct: 16 EYDKFIRTTDRKHEAVVNDFYSRVLDSGDIYRADYEG 52
>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
Length = 584
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 166 SWSIENNINHYKNETAV---KIWILMKKQNWLLPLSVPFSPLNPTHQFEAVIMFNVLYSA 336
+WS+ + H+K ET + IW LP +PFSP+ + E IM+ VL
Sbjct: 308 TWSLSPDFKHWKEETTLTVGDIWASESFNQMGLPHVLPFSPVLSVN--EDGIMYAVLNDV 365
Query: 337 K 339
K
Sbjct: 366 K 366
>04_04_1360 + 32889597-32890343
Length = 248
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 499 GEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSN--TTVWHYHCQSASM 645
G L A+R G H ++ WD+S+V+ S+ + V H+H + A++
Sbjct: 22 GRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATV 72
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 NINHYKNETAVKIWILMKKQNWLLPLSVP-FSPLNPTHQFEAVIMFNVLYSAKDY 345
N H + + K +++K +L + + FSP NP H+ + + F + K Y
Sbjct: 298 NCEHCRQKVVAKKRFMIEKAPSVLTIHLKRFSPFNPRHKIDKKVQFQPTLNLKPY 352
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 29.1 bits (62), Expect = 3.5
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Frame = +1
Query: 154 TISASWSIENNINHYKNETAVKIWILMKKQNWLLP-LSVPFSPLNPTHQFEAVIMFNVLY 330
T+ ++++ H+KN ++W L +++ +LP L + + L P H + F +Y
Sbjct: 408 TLGRLLRMDHHTTHWKNVQKSELWELKQEETDILPALQLSYMYL-PLH-LKRCFSFCAVY 465
Query: 331 SAKDYDTFYKTTV----YMKDRVNQDLYIYVLSTLHIHRSDLEGYAIPPIYEVLPEYFNN 498
KDY+ F K ++ + V + I +L T + DL A+ + E LP F+
Sbjct: 466 -PKDYN-FEKDSLCEIWVAEGFVEPEGDIPILDTSKKYFEDLCFNALECVVESLPCDFDR 523
Query: 499 GEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSN 606
L + G RM + + T+ W++ V + N
Sbjct: 524 LINLRRYKSQGFVYDRMGQLHLGTH-WEHEVRLMKN 558
>10_08_0422 -
17796916-17797167,17797328-17797453,17797546-17797700,
17797793-17797907,17798022-17798118,17798274-17798368,
17798500-17798585,17798689-17798819,17798909-17799090
Length = 412
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 122 AWKYNKEISICFFANSTESSVLTGSHNPGAKM 27
+W N++ + F N T++ VL HNP K+
Sbjct: 142 SWTLNEDKFLKSFTNRTKAVVLNSPHNPTGKV 173
>02_04_0364 +
22374735-22374749,22374903-22375076,22377858-22377935,
22379270-22380407,22380507-22380901,22382230-22382416,
22382872-22382942,22383705-22383755
Length = 702
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 418 TLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 522
T+ + SD E A P LP+ NN +L++ Q
Sbjct: 382 TMRVFESDFEAKAAPEFGNTLPKSSNNNSMLNSEQ 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,775,297
Number of Sequences: 37544
Number of extensions: 357108
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -