Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K18
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,...    29   3.9  
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea...    29   3.9  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   6.8  

>At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,
           putative / stearoyl-ACP desaturase, putative similar to
           Acyl-[acyl-carrier protein] desaturase from Spinacia
           oleracea SP|P28645, Olea europaea SP|Q43593; contains
           Pfam profile PF03405 Fatty acid desaturase
          Length = 396

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = +1

Query: 130 PNHVSKSITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPF-SPLNPTHQFEA 306
           P H+  S T      + N + H    T  K+ I    +NW     + +  P+  + Q + 
Sbjct: 36  PRHLQVSKTFRPIKEVSNQVTH--TITQEKLEIFKSMENWAQENLLSYLKPVETSWQPQ- 92

Query: 307 VIMFNVLYSAKDYDTFYKTTVYMKDRVNQ--DLYIYVL 414
               + L   KD D FY+    ++DR  +  D Y  VL
Sbjct: 93  ----DFLPETKDEDRFYEQVKELRDRTKEIPDDYFVVL 126


>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
           family protein similar to Pop3 (GI:3434986)
           [Schizosaccharomyces pombe]; contains Pfam PF00400: WD
           domain, G-beta repeat (6 copies, 2 weak);
          Length = 312

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 568 TYKWDNSVVIRSNTT----VWHYHCQSASMSYYLPDYSLNAH 681
           T  WD ++V+ +N      VW   C+  +M+ + P + L AH
Sbjct: 175 TVMWDGTMVVAANDRGTCYVWRSLCERQTMTEFEPLHKLQAH 216


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 343 YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 435
           Y   +KT V +  R N DLY+      HI++
Sbjct: 534 YGRIFKTVVILSSRKNSDLYVQEAKLDHIYK 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,233
Number of Sequences: 28952
Number of extensions: 315360
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)