Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K17
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.39 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.2  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    28   1.2  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   2.1  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   3.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.8  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   6.3  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   8.3  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   8.3  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   8.3  

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 168 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 61
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = -3

Query: 426 MEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSINNVSCF 247
           M   ++  F+  FV  T      ++ + L     R   + I+D F+G   NP +  +  F
Sbjct: 151 MSVAIITAFVCTFVLYTG---TLLFGDRLFDKPHRLSGNPIYDAFMGACLNPRLGKLLDF 207

Query: 246 FIFTEI*VLHFRIKHIS 196
            +F E+ +  F +  IS
Sbjct: 208 KMFFEVRIPWFILFFIS 224


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/82 (25%), Positives = 43/82 (52%)
 Frame = +1

Query: 169 LNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCV 348
           L D   VV R V  +E  +++ G N   +  + +    +T+K+++ LV  SS+  + + +
Sbjct: 322 LGDNSLVVIRAVDLAEQIHVS-GINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELL 380

Query: 349 LVNAIYFKGSWKDKFDKELTQD 414
           L+++  F G      + +LT+D
Sbjct: 381 LMSSSSFNGHSVSVQEYDLTKD 402


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = +1

Query: 226 LNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKEL 405
           L FG NE     +   +E    K    L DP SL   T    ++ I F G+   K   +L
Sbjct: 219 LGFGANEAYRRYLGLLIESENGKVGNTLSDPCSLRGRTYD--IDGIEFAGTGDLKQCLKL 276

Query: 406 TQDRPFHVNKDK 441
           T +    +NKDK
Sbjct: 277 TYNL---LNKDK 285


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 219 HFRIKHISGHNSKLII*FI 163
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 254 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 102
           A  +FL  F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 58  NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 228
           ND + +A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 157 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 297
           NG ++ D   VV   VF  + QN    KNE    EA+    T V D T  +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 372 LKVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSIN 262
           +++  +  +T+   V R    +  DTF+G++F    N
Sbjct: 189 IRIEAVINDTVGTLVTRAYTSKESDTFMGIIFGTGTN 225


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 236 VKMKKQLTLLILGLKTTPINVS 301
           + + +QLT+L+ G+ +TPI V+
Sbjct: 77  ISIYQQLTILLFGVLSTPITVN 98


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 272 GLKTTPINVSKIWWILVRWTVAHSVF 349
           GL    + ++K WW ++ WTV ++ F
Sbjct: 188 GLNGKKMYITK-WWDMINWTVVNNRF 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,916
Number of Sequences: 5004
Number of extensions: 49587
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)