Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K16
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     29   2.0  
10_07_0193 - 13954819-13954950,13955340-13955375                       29   2.7  
11_05_0003 + 18256324-18256866,18257018-18257392,18258287-182585...    27   6.2  
11_01_0104 - 781471-781888,781994-782101,782195-782511                 27   6.2  
05_04_0032 + 17363039-17363436,17363626-17363936,17364058-173641...    27   6.2  
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684...    27   6.2  
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367...    27   8.2  
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575...    27   8.2  

>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 320 KNILEKGFDTTGTGFKSIE--SWWYKSRLGFP 409
           +NI   GF+   +  +SIE  S+WY SRL +P
Sbjct: 230 RNIANGGFNYVKSNERSIEFYSFWYSSRLRYP 261


>10_07_0193 - 13954819-13954950,13955340-13955375
          Length = 55

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 450 GKPPRVPRGNRSLCGKPRRLLYH 382
           G+ PR+PR    LC  P R +YH
Sbjct: 19  GRLPRLPRHQEFLCFHPHRRVYH 41


>11_05_0003 +
           18256324-18256866,18257018-18257392,18258287-18258514,
           18258750-18258920,18259040-18259123
          Length = 466

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 471 TMTDIGRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSK 340
           T+T  G+GK   +P  N     + R+ L  +L ML   VP +SK
Sbjct: 263 TVTGDGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISK 306


>11_01_0104 - 781471-781888,781994-782101,782195-782511
          Length = 280

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 176 MGRLMSINDKRLDMLEIDSFVYKLDT---GKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 346
           +G ++S +DK + MLE+     KL     GK    + S++ H + E+   + +   K  +
Sbjct: 51  LGDILSCSDKAISMLELGGDTKKLTNLVGGKRKGDKHSMDNHNLEEEAKESVSKRRKNAE 110

Query: 347 TTGT 358
            TG+
Sbjct: 111 HTGS 114


>05_04_0032 +
           17363039-17363436,17363626-17363936,17364058-17364120,
           17364697-17365181,17365772-17366122
          Length = 535

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = +2

Query: 35  QKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD---AVVRIFIGPKYDCMGRLMSINDK 205
           QK ++ M    +  R +HQ  K    ++    +D   AVV    G   DC+   M  ND 
Sbjct: 325 QKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDCVLECMKKNDA 384

Query: 206 RLDMLEID--SFVYKLDTGKNNIVRSS 280
           + D ++ D      ++  GK+N + ++
Sbjct: 385 QEDAVQSDLNGITIEMFCGKDNFLTNA 411


>04_04_1249 -
           32067644-32067787,32068245-32068346,32068415-32068438,
           32068439-32068543,32068625-32068729,32068885-32068966,
           32069254-32069456,32069534-32069692,32070045-32070154,
           32070264-32070405,32070544-32070690,32070773-32070847,
           32070923-32071132,32071223-32071426,32071514-32071633,
           32071743-32071852,32072033-32072177,32072266-32072499,
           32072611-32072646
          Length = 818

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 357 VPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLPVS 247
           VP  +   + +  V  LC   PC+  + +T++F+ +S
Sbjct: 717 VPFRNSKLTYLLQVSDLCKWMPCLGGDSKTLMFVNIS 753


>03_05_0165 +
           21435948-21436144,21436234-21436318,21436690-21436768,
           21436892-21437005,21437249-21437361,21437570-21437677,
           21437760-21437879
          Length = 271

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 210 LTCSKSIASSINSTLVRTTSSAARSRCTA 296
           +TC +S +SS ++ +VRT ++AA +  TA
Sbjct: 30  ITCHRSSSSSSSARVVRTGAAAAPAAATA 58


>03_02_0124 -
           5749183-5749773,5750628-5751160,5751191-5753035,
           5753632-5753820,5753911-5754013,5754087-5754269,
           5754392-5754484,5755031-5755219,5756133-5756327
          Length = 1306

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 366 LKPVPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLP 253
           + P  ++  P+SNM L+HG   ++P ++  ++   F P
Sbjct: 660 IPPTSLIGAPWSNMHLIHGY--VSPPMAHYVQNHTFAP 695


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,800
Number of Sequences: 37544
Number of extensions: 248172
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)