Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K16
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.39 
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   30   0.90 
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   28   4.8  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         28   4.8  
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08)                 28   4.8  
SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)            27   6.4  
SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042)                 27   6.4  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_19901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        27   8.4  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           27   8.4  
SB_21554| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 237 SINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVS 344
           S+NS +   + ++   RC  +S  D  L+TYW+KV+
Sbjct: 229 SLNSCVSCISQASRADRCLPVSRSDSILETYWRKVN 264


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
 Frame = -2

Query: 487 GLDGSHDDGH-RERQTAEGSER*QKPVRKAKATLIPPTLDALETCSSCVETFFQYVFSPR 311
           GL  +H D H     TAE  +R      K    LIP   DA E       T    V+S  
Sbjct: 481 GLVRNHSDSHYASLSTAEVKQR-----LKNIGELIPEHEDAKEKLKRLESTRHIMVWSDN 535

Query: 310 SLFDNAVHLERAADDVVLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFG 161
           S   N  H        +L  V+F+DE  ++ H    VI   E  H  + G
Sbjct: 536 STAMNHGH--------ILLLVQFLDEMKEYGHGDVDVISLVEKPHVYIIG 577


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 333 KKVSTQLEQVSRASRVGGIRVALAFRTGFCY 425
           KK+ST+   + RAS V  +++   F TG CY
Sbjct: 613 KKMSTRSMGLKRASSVKYVQLLYLFNTGKCY 643


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +3

Query: 198 MTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQLEQVSRASR 377
           +TN +  +KS+ + I  T  + T+   RSR   +S      + Y+K  +  L  +S  S 
Sbjct: 283 LTNQIRRNKSVTNQIRRTNEKVTNQIKRSR-LPISLGVTSKQPYYKGNARSLIYISGTSL 341

Query: 378 VGGIRVALAFRTGFCYLSE 434
           V  + V        C+L +
Sbjct: 342 VPPLTVRTETPNTLCFLQQ 360


>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +2

Query: 56   VYVARMRRLNHQPFKVSIDVMSDKAVDAVVRIFIGPKYDCMGRLMSINDKRLDMLEID 229
            V++A + + + +P   S   +  +    ++   IGP +  +GR + +++  LD +E D
Sbjct: 1097 VFIALLVKTSSEPLPKSGSSIVSRDTLMLLAREIGPAWKALGRALLLDNAELDQIEAD 1154


>SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08)
          Length = 194

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 155 IGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTGK 259
           IG ++  +GR++ + D  LDM++ D    K  + K
Sbjct: 117 IGKRWKALGRVLRLKDSELDMIDEDESKLKEKSNK 151


>SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)
          Length = 110

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 450 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 322
           GKPPR P+   SL     +   H + +  KP+P+ +    N F
Sbjct: 65  GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 107


>SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042)
          Length = 445

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 195 SMTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWK-KVSTQLE 356
           S+ + + C +S+ ++  + L      + R +C AL  +D     YW+ KV   ++
Sbjct: 27  SLLDLVGCVRSLETASRAVLCHQAVISKRQKCLALFGKDSQQFCYWRNKVQVHIK 81


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 450 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 322
           GKPPR P+   SL     +   H + +  KP+P+ +    N F
Sbjct: 800 GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 842


>SB_19901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 222 KSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQLEQVSRASRVGGIRVAL 401
           K +   +   L+     +  +R   +  R+R L    +K   +  + SR  R  G+RV L
Sbjct: 132 KKLLKELPEKLIGVLQPSTAARVAEIFKRERALPGGTRKDEKETAKNSRGVRERGVRVEL 191

Query: 402 AFR 410
            F+
Sbjct: 192 RFK 194


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 87  TSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTT 266
           +SLS  L       +L  +   +  PNT     S  S +     + S  SSI ST++ + 
Sbjct: 347 SSLSTTLIPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMESV 406

Query: 267 SSAARSRCTA 296
           +S+ +   T+
Sbjct: 407 ASSIQLNITS 416


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 87  TSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTT 266
           +SLS  L       +L  +   +  PNT     S  S +     + S  SSI ST++ + 
Sbjct: 129 SSLSTTLIPSISTSILPYNTTVIATPNTTRMVTSSISSSTVNVSAISTTSSIESTIMASV 188

Query: 267 SSAARSRCTA 296
           +S+ +   T+
Sbjct: 189 ASSIQLNITS 198


>SB_21554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 376 LDALETCSSCVETFFQYVFSPRSLFDNAVHLERAADDVVL 257
           LD  ++   C++     VFSP     +A+H  RA  D ++
Sbjct: 4   LDWTDSLEQCIDNSIIKVFSPEICKKSAIHAARAEPDELM 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,904,845
Number of Sequences: 59808
Number of extensions: 288066
Number of successful extensions: 877
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)