Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K16
(491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55210.1 68418.m06882 expressed protein similar to unknown pr... 30 0.97
At2g05645.1 68415.m00604 hypothetical protein 30 0.97
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si... 28 3.0
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim... 28 3.0
At5g10710.2 68418.m01241 expressed protein 28 3.9
At5g10710.1 68418.m01240 expressed protein 28 3.9
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 28 3.9
At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su... 28 3.9
At4g29200.1 68417.m04177 hypothetical protein 27 5.2
At2g34210.1 68415.m04186 KOW domain-containing transcription fac... 27 5.2
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 5.2
At1g50730.1 68414.m05705 expressed protein 27 5.2
At3g01200.1 68416.m00026 expressed protein contains Pfam domain ... 27 6.9
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 9.1
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 27 9.1
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 27 9.1
>At5g55210.1 68418.m06882 expressed protein similar to unknown
protein (pir||T04913)
Length = 168
Score = 29.9 bits (64), Expect = 0.97
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 240 INSTLVRTTSSAARSRCTAL-SNRDRGLKTYWKKVSTQLEQVSRASRVGG 386
+ S L RT+S + TA+ S R R K W +VST V RAS+ G
Sbjct: 4 VGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNG 53
>At2g05645.1 68415.m00604 hypothetical protein
Length = 204
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 384 HQLSMLLKPVPVVSKPFSNMFLVHG 310
H+ +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154
>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
similarity to unusual floral organs (UFO) GI:4376159
from [Arabidopsis thaliana]
Length = 403
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 153 LLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARS 284
L PN I+W + +LTC+ S+ SS N L + S ++ S
Sbjct: 112 LFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155
>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 190
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 363 KPVPVVSKPFSNMFLVHGLCSIT 295
K PV +K F NM +H LCS T
Sbjct: 99 KIFPVNNKYFENMIFIHALCSST 121
>At5g10710.2 68418.m01241 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 262 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 83
VL S F+++ I EH F + + + ++F K D V L+ +DR + +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201
Query: 82 K 80
K
Sbjct: 202 K 202
>At5g10710.1 68418.m01240 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 262 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 83
VL S F+++ I EH F + + + ++F K D V L+ +DR + +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201
Query: 82 K 80
K
Sbjct: 202 K 202
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 153 NIRTTASTALSDITSIDTLKGW 88
NIRTT T +S I +I+ + GW
Sbjct: 109 NIRTTVGTIISVIVNIEGVSGW 130
>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
subunit family protein contains Pfam profile: PF00766
electron transfer flavoprotein, alpha subunit
Length = 363
Score = 27.9 bits (59), Expect = 3.9
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +3
Query: 24 RLRCKRRSLIWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMT 203
R K + + + R + ITSLSRC+S L +L + + P T++ + S+
Sbjct: 8 RALTKNKFVASNAPRSISISITSLSRCISTL----ILAEHESGTIKPQTVSTVVAANSLG 63
Query: 204 NALTCSKSIASSINSTLVRTTSSAA 278
+ + S +A S S+L S AA
Sbjct: 64 ESSSISLLLAGS-GSSLQEAASQAA 87
>At4g29200.1 68417.m04177 hypothetical protein
Length = 457
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 51 IWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCSKSI 230
I+ L C VL L CL L + + + F+++++ NT+ A N+++C+ S+
Sbjct: 399 IYCDLTCCTVL---LCLCLKALMEFKSMHFIFLFMVLGNTVCCNALIFEFLNSISCNCSM 455
>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
family protein
Length = 990
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 122 DKAVDAVVRIFIGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTGKNNIVRSSL 283
D V V+I +GP GRL+ + DK L +E+++ K+ TGK + R ++
Sbjct: 683 DHLVGTYVKIRLGPFKGYSGRLVEVKDK-LVRVELEA---KIVTGKLHFERKAI 732
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 450 GKPPRVPRGNRSLCGKP--RRLLYH 382
GKPP GN SLCGK + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210
>At1g50730.1 68414.m05705 expressed protein
Length = 1013
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +3
Query: 42 RSLIWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCS 221
RS W+TLRV + ++ LS L Q L S ++ N + + + ++C+
Sbjct: 788 RSSSWATLRVKVKIFCAIMSLLSTLSQDNLPYHSANPEIIGNELLFFGDSSYKQELVSCT 847
Query: 222 KSIASSINSTLVRTTSSAAR 281
+ + S + + + +S +R
Sbjct: 848 QLVLSELLDAIEQESSQISR 867
>At3g01200.1 68416.m00026 expressed protein contains Pfam domain
PF03618: Domain of unknown function (DUF299)
Length = 377
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 179 GRLMSINDKRLDMLEIDSFVYKLDTG--KNNIVRSSLEMHGVIE--QRPWTKNILEKGFD 346
GR+ ++ND +E F K D G N+ ++ + + GV + P + I +KG+
Sbjct: 202 GRVKTLNDAYFKRIEAIEFTIKQDDGTLPENLSKADIVLVGVSRTGKTPLSTYIAQKGYK 261
Query: 347 TTGTGF 364
F
Sbjct: 262 VANVPF 267
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +3
Query: 246 STLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQLEQVSRASR 377
S ++++ + R + +SNR +GL + W K+ +++ + + +R
Sbjct: 278 SAILQSVNGLRFYRISDISNRAKGLLSRWTKLFAKIQAMKKQNR 321
>At2g48050.1 68415.m06014 expressed protein ; expression supported by
MPSS
Length = 1500
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 328 IGKRFRHNWNRFQEHRELV 384
IG+ FRH W+R Q + ++V
Sbjct: 980 IGRIFRHIWSRMQSNNDIV 998
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -2
Query: 469 DDGHRERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 302
DD + + + + S ++PV K A+ P T D+L + + ++ F F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168
Query: 301 DNAVHLERAADDVVLTS 251
+ E AA D + ++
Sbjct: 169 --SAGFEPAAKDSLFSA 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,113,140
Number of Sequences: 28952
Number of extensions: 194709
Number of successful extensions: 649
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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