Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K15
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0033 + 27820563-27823482,27823593-27823996                       30   1.7  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   5.2  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   6.9  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   9.2  
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185...    27   9.2  
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187...    27   9.2  

>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 53  GVTENVSLQDKRCRRSVCGAPEKGFIPFP 139
           GV  N++L+  R    +CG+P  G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 351 YAKDFETFYKSAAFARVHLNEGQFLYAYYIAV 446
           Y KD   FY  +   +  + EG+FL ++Y+ +
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQI 728


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 398 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 252
           +S +G +   FK+ +++E   K   +   L  EDG++++  K  DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 376 TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSFYQLLMK 495
           T+ P S  V T +  S+CTH   QLSSA +L     +  +K
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELK 105


>04_04_0477 +
           25517060-25517152,25517263-25517382,25518203-25518506,
           25518944-25519305,25519401-25519575,25520510-25520574,
           25520725-25520790,25521275-25521350,25521813-25521922
          Length = 456

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +3

Query: 24  GLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVE 203
           G + ++ + +V  K Y  + +    + +  Q     +F D+ ++  D+  Y  G DY   
Sbjct: 98  GALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVFSDIFKLICDEYDYYEGADYSHT 157

Query: 204 ANI---DNYTNKTAVEEF 248
            NI   D +   T  E F
Sbjct: 158 DNILQMDAHNTMTETENF 175


>01_06_0006 -
           25517892-25517935,25518156-25518276,25518598-25518733,
           25519189-25519280,25519358-25519426,25519710-25519821,
           25519897-25520015,25520302-25520355,25520811-25520891,
           25520968-25521051,25521124-25521315,25521633-25521746,
           25521832-25521978,25522066-25522302,25522762-25522810,
           25522894-25523027,25523124-25523324,25523532-25523701,
           25523773-25523875,25524198-25524361,25525015-25525055,
           25525144-25525187
          Length = 835

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +3

Query: 90  VDAVFVERQKKVLSLFQDVDQVNVDDEYYK-------IGKDYDVEANIDNYTNKTAVEEF 248
           VD V+   Q+K + +++ +    +++  Y+       I K    E +   Y NK   +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710

Query: 249 LKLYRIGY 272
           LKL  +G+
Sbjct: 711 LKLPEMGF 718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,455
Number of Sequences: 37544
Number of extensions: 312553
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)