Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K15
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   1.9  
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P...    29   2.5  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   5.8  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   5.8  
At1g75110.1 68414.m08723 expressed protein                             28   5.8  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   5.8  

>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +3

Query: 108 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKTAVEEFLKLYRIGYLPK 281
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA IDN    +  ++   +        
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 282 YYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFL 425
             EF +F Q     +  +F +F   ++   F +   +  + L E  +L
Sbjct: 142 ALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISLYEASYL 187


>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
          Length = 767

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 120 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANI-DNYTNKTAVEEFLKLYRIGYLPKYYEFS 296
           K+++L  DV ++ V+     IG   D ++ + D +TN T  ++ L+L ++GY  K  E++
Sbjct: 287 KIVNLVNDVYEIEVNTI---IGNPEDFKSLVPDFHTNDTEFQQVLELVKMGYRLKKTEWN 343


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 156 NVDDEYYKIGKDYDVEANIDNYTNKTAVEEFLKLYRI 266
           N +DEY K   DYD    +D  T K A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 33  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 185
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At1g75110.1 68414.m08723 expressed protein
          Length = 428

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 132 LFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKTA 236
           L  DVD V + + +  + +D DVE+  D + N TA
Sbjct: 247 LLSDVDIVFLQNPFSHLHRDSDVESMSDGHDNNTA 281


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 395 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 249
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,523
Number of Sequences: 28952
Number of extensions: 258273
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)