Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K14
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    28   0.47 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   3.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   5.8  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   7.6  

>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 225 YIIIFTIRMCKYFTVCL 275
           YII++ + MC++FTV L
Sbjct: 215 YIIVYAVNMCRFFTVGL 231


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 169 ESYLSLKARMRLFTNIKITILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAPQYFP 342
           ES + LK R  +    K TI+ +S+Y     S F F S+Y     + F  L    Y P
Sbjct: 659 ESSVELKDRSIV---TKTTIMSWSKYQGTKESLFQFLSIYIPECMLPFTKLLKSIYSP 713


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  RLWQAFDLYLMLKYTYFFFYK 161
           R W   D Y M++YT  F+++
Sbjct: 751 REWDPLDEYCMVQYTDHFYFR 771


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 75  HSE-YKGNHRLWQAFDLYLMLKYTYFF 152
           HS+ YKGN+ LW+ +  Y ++ + Y +
Sbjct: 704 HSQCYKGNYELWR-YIPYSIIHFHYLY 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,387
Number of Sequences: 5004
Number of extensions: 29297
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)