Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K14
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           27   5.2  
05_07_0083 + 27580710-27580767,27580869-27580924,27581024-275811...    27   5.2  
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453...    27   5.2  
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246...    26   9.1  

>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 131 HQVQIKGLPESMVSFIFTMISNASKCIDI 45
           H +Q+KG+PE++       + N S C +I
Sbjct: 576 HCLQVKGIPEALGGLTNLQVLNLSHCYNI 604


>05_07_0083 +
           27580710-27580767,27580869-27580924,27581024-27581133,
           27582083-27582148,27582149-27582278,27582636-27582737,
           27582969-27583010,27583153-27583194,27583356-27583432,
           27583730-27583856,27583953-27584120,27584359-27584484,
           27584575-27584685,27584776-27584910,27585540-27585614,
           27585827-27585934,27586015-27586101,27586187-27586273,
           27586762-27586830
          Length = 591

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 198 EAFYQYKNHYIIIFTIRMCKYFTVCL 275
           E  +    HY+++F    C+Y  +CL
Sbjct: 78  EGHFDISKHYMLMFIANACRYDLLCL 103


>02_04_0005 -
           18843061-18843201,18843309-18843440,18844457-18845315,
           18845884-18845973,18846748-18846869,18846950-18847049,
           18847151-18847205,18847275-18847365,18847453-18847572,
           18847681-18847780,18847890-18848018,18848099-18848201,
           18848670-18848743,18848848-18848933,18849297-18849358,
           18849454-18849541,18849937-18850029
          Length = 814

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +1

Query: 151 SFISV*ESYLSLKARMRLFTNIKITILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAP 330
           SF    +S L+    ++  +NI     + ++ + V +     F ++G+   +SF    +P
Sbjct: 75  SFAYAAQSLLAALGSIQFVSNIAFAYFVLNKTISVKVMVATTFIVFGNIFLVSFGNHQSP 134

Query: 331 QYFP 342
            Y P
Sbjct: 135 VYTP 138


>01_05_0788 +
           25223373-25223405,25224285-25224373,25224496-25224624,
           25224710-25224766,25224844-25224916,25225509-25225667,
           25226755-25226904,25227013-25227268,25227358-25227479,
           25227531-25227599,25227653-25227739,25227842-25227930,
           25228168-25228224,25229162-25229258,25229348-25229506
          Length = 541

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 120 LYLMLKYTYFFFYKCLRKLFIVKSPDEAFYQYKNHYIIIFTIRMCKYF 263
           +YL++ Y  F     L+  FI    +   YQ   +++    I +C YF
Sbjct: 486 IYLLISYRVFELTGVLKSAFIPSRDNNRLYQ---NFVAGIAISVCLYF 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,970,193
Number of Sequences: 37544
Number of extensions: 139750
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)