Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K14
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31375| Best HMM Match : IQ (HMM E-Value=0.00076)                    27   4.1  
SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         26   9.4  
SB_27751| Best HMM Match : Laminin_G_2 (HMM E-Value=1e-06)             26   9.4  
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_31375| Best HMM Match : IQ (HMM E-Value=0.00076)
          Length = 327

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 174 LFIVKSPDEAFYQYKNHYIIIFTIRMCKYFTVCLFFTLW*HDKN 305
           L I++   E F    N  +I  T R+ K  T+C+FF ++    N
Sbjct: 164 LLILREARERFRALPN--VIRVTTRIAKQMTICVFFLMYSSSSN 205


>SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 241 QYVCVNISPFVFFSLYGDTTKISFN 315
           Q+V +  SP V   LY D T ISF+
Sbjct: 843 QFVSIAASPKVKIDLYADDTTISFS 867


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 75   HSEYKGNHRLWQAFDLYLMLKYTYFFFYKCL--RKLFIVKSPDEAFYQYKNHY 227
            H +Y G+  LW++   +++  Y  ++   C     L++ +S D   + +   Y
Sbjct: 1905 HDDYDGDSDLWRSGSSWILRAYICYYLGPCWSGHYLYLYRSRDHLTHSHYPEY 1957


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 263  EIFTHTYCEYNNIVIFILVKSLIRA 189
            E+FT+T  EY ++V  IL KS + A
Sbjct: 1807 EVFTNTATEYTSLVNQILQKSSLEA 1831


>SB_27751| Best HMM Match : Laminin_G_2 (HMM E-Value=1e-06)
          Length = 255

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 LKYTYFFFYKCLRKLFIVKSPDEAF 206
           L++ YF FY C+  L   K  ++AF
Sbjct: 174 LQFNYFRFYGCIGNLMYQKGIEKAF 198


>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 162 TYKRRNRCILASSTNQRLARVYGFLYIHYDFKCK 61
           T+ RR  C L       L R  GF YI +DF+ +
Sbjct: 247 TWCRRTTCALCLWETVTLKRKDGFRYIVFDFEAQ 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,942,988
Number of Sequences: 59808
Number of extensions: 184572
Number of successful extensions: 371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)