Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K14
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calc...    27   4.8  
AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calc...    27   4.8  
AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPas...    27   4.8  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 160 SV*ESYLSLKARMRLFTNIKITILLYSQYVCVNISPF 270
           S+ E YL   AR  + T+  + IL+  Q+VC+++S F
Sbjct: 231 SLGEQYL---ARENVATSQSVCILIVLQFVCISVSSF 264


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
           protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 113 GLPESMVSFIFTMISNASKCIDIGH 39
           GLPE+    +++ I +  +CI +GH
Sbjct: 202 GLPETASDKLYSFIGSRKECIPVGH 226


>Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical protein
            W09C2.3c protein.
          Length = 1249

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 226  ILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAPQYFPP 345
            IL ++ Y  + I  FV F  YGDT      GL+AP + PP
Sbjct: 954  ILCHALYQLIII--FVIF-FYGDTIFGIKTGLYAPLFAPP 990


>Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical protein
            W09C2.3b protein.
          Length = 1228

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 226  ILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAPQYFPP 345
            IL ++ Y  + I  FV F  YGDT      GL+AP + PP
Sbjct: 933  ILCHALYQLIII--FVIF-FYGDTIFGIKTGLYAPLFAPP 969


>Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical protein
            W09C2.3a protein.
          Length = 1252

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 226  ILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAPQYFPP 345
            IL ++ Y  + I  FV F  YGDT      GL+AP + PP
Sbjct: 957  ILCHALYQLIII--FVIF-FYGDTIFGIKTGLYAPLFAPP 993


>AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calcium
            ATPase (136.9kD) (mca-1) protein.
          Length = 1249

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 226  ILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAPQYFPP 345
            IL ++ Y  + I  FV F  YGDT      GL+AP + PP
Sbjct: 954  ILCHALYQLIII--FVIF-FYGDTIFGIKTGLYAPLFAPP 990


>AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calcium
            ATPase (136.6kD) (mca-1) protein.
          Length = 1252

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 226  ILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAPQYFPP 345
            IL ++ Y  + I  FV F  YGDT      GL+AP + PP
Sbjct: 957  ILCHALYQLIII--FVIF-FYGDTIFGIKTGLYAPLFAPP 993


>AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1228

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 226  ILLYSQYVCVNISPFVFFSLYGDTTKISFNGLFAPQYFPP 345
            IL ++ Y  + I  FV F  YGDT      GL+AP + PP
Sbjct: 933  ILCHALYQLIII--FVIF-FYGDTIFGIKTGLYAPLFAPP 969


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
           protein C06B3.2 protein.
          Length = 665

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +3

Query: 105 WQAFDLYLM----LKYTYFFFYKCLRKLFIVK 188
           WQ +  Y++    L Y + FF+ CL ++ +VK
Sbjct: 634 WQVYVYYILPATILTYIFAFFWSCLFEIPVVK 665


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,784,958
Number of Sequences: 27780
Number of extensions: 154536
Number of successful extensions: 357
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)