Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K14
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57610.1 68418.m07197 protein kinase family protein similar t...    28   1.5  
At1g55280.1 68414.m06315 expressed protein                             28   1.9  
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam...    27   2.5  
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ...    27   4.4  

>At5g57610.1 68418.m07197 protein kinase family protein similar to
           protein kinase [Glycine max] GI:170047, MAP3K delta-1
           protein kinase [Arabidopsis thaliana] GI:2253010;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1054

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 162 TYKRRNRCILASSTNQRLARVYGFLYIHYDFKCK 61
           T  RR R I+A  T   +  ++G   +H+D KC+
Sbjct: 881 TIDRRKRLIIAMDTAFGMEYLHGKNIVHFDLKCE 914


>At1g55280.1 68414.m06315 expressed protein
          Length = 390

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 148 SSFISV*ESYLSLKARMRLFTNIKITILLYSQYVCVNISPFVFFSLYGDTTKISF 312
           SS +++  + +S +  M  + N+K+++LLY   V + +   VF    G+ + I+F
Sbjct: 235 SSALNLDRTMVSNEESMEEYANLKLSLLLYDA-VLILLGSLVFSFSLGENSAIAF 288


>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 823

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +3

Query: 159 KCLRKLFIVKSPDEAFYQYKNHYIIIFTIRMCKYFTVCLFFTLW*HDKNIFQWFICATIL 338
           +CLR+LF  K+P++ +   K    I+          VCL  T    + N F W I A I 
Sbjct: 650 QCLRRLFEEKNPEQGYNGLKYFLTIV---------AVCLRTTYSVDEDNQFIWRILAGIF 700

Query: 339 SS 344
           S+
Sbjct: 701 SA 702


>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 386

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 168 LNTYKRRNRCILASSTNQRLARVYG 94
           LN   RR +C+L  S ++++ R+YG
Sbjct: 344 LNEEGRRKKCLLKWSDSKKINRIYG 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,018,639
Number of Sequences: 28952
Number of extensions: 131668
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)