Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K12
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   0.74 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   2.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   6.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   9.1  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    24   9.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 13  SSGAHCPRAIQCGVPKTYHFKNKDVDAVFGGAPEKGFYPLFQGCRPKLTLMMNTTKFGKD 192
           S  A+CP  ++    +  HF +KDVDA F    E+     F    P  T+++   ++ + 
Sbjct: 287 SGNAYCPIDVETRTERV-HFISKDVDASFAIVSEE-----FVNRFPNNTIILKVPEYNES 340

Query: 193 YDVEAN 210
            +++ +
Sbjct: 341 MEIKVD 346


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 158  VNLGLHPWKRG*NPFSGAPPNTASTSLFLK*YVFGTPHW 42
            +N+ + P++   N +S    + A   LF+  Y F   HW
Sbjct: 1705 LNINIKPFQVDLNDWSSELNSNAHLELFMNFYNFSNSHW 1743


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 202  EANIDXYTNKKAVEEFLK 255
            E N D Y NK A++EFL+
Sbjct: 1008 ENNADVYFNKCAIKEFLE 1025


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 169 NTTKFGKDYDVEANIDXYTNKKAVEEF-LKLYRIGYLPKY-YEFSIFYQKL 315
           N+++FGK   VE ++    +  A+E + L+  R+ +  ++   + +FYQ L
Sbjct: 225 NSSRFGKFIKVEFSLSGEISNAAIEWYLLEKSRVVHQNEFERNYHVFYQLL 275


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 327 YCSFPLVPTMLKTLKPS 377
           YCS+   P MLKT  PS
Sbjct: 208 YCSYACSPGMLKTQWPS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,040
Number of Sequences: 5004
Number of extensions: 32729
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)