Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K12
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1344 + 35823588-35824643                                         29   1.6  
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539     28   2.8  
08_01_0694 - 6136025-6136749,6137425-6137971                           27   4.9  
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     27   4.9  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    27   4.9  
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343...    27   6.5  
02_05_0777 + 31691637-31692042,31693060-31693210,31693325-31693541     27   6.5  
07_03_0475 + 18544637-18544772,18544925-18545031,18545114-185452...    26   8.6  

>02_05_1344 + 35823588-35824643
          Length = 351

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +1

Query: 70  FKNKDVDAVFGGAPEKGFYPLFQGCRPKLTLMMNTTKF 183
           FKN+      GG P K F+P     RPK     NTT F
Sbjct: 67  FKNQSGGGGGGGGPRKHFFP-----RPKAAAPRNTTSF 99


>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
          Length = 702

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 258 QFQEFFNSF-LIGVVIDVGFNVIVLSKFCSI 169
           +F E FN+F L+ + +   F  I+ SK+CS+
Sbjct: 333 EFGEHFNTFELVSMYLAPSFQAILRSKYCSL 363


>08_01_0694 - 6136025-6136749,6137425-6137971
          Length = 423

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 52  VPKTYHFKNKDVDAVFGGAPEKGFYPLFQGC 144
           +P  Y  +N ++ AV G      FYPLF GC
Sbjct: 323 LPAFYFLENANI-AVAGSFARLLFYPLFYGC 352


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 75  EQRCRRSVWWSARKRVLSPFP 137
           E+R R +VWW+  KR+  P P
Sbjct: 771 ERRGREAVWWAGEKRLGVPRP 791


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 327 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 211
           S FP  + E GE+ V GK+ D +       SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538


>10_08_0451 +
           18033065-18033253,18033746-18033805,18034256-18034324,
           18034751-18034786,18035081-18035146,18035345-18035443,
           18035543-18035620,18035724-18035802,18035999-18036093,
           18036251-18036335,18036505-18036698,18036804-18036922,
           18037015-18037057
          Length = 403

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 234 FLIGVVIDVGFNVIVLSKFCS 172
           FL+ VV+DVG    VLS FC+
Sbjct: 80  FLVEVVLDVGCGTGVLSIFCA 100


>02_05_0777 + 31691637-31692042,31693060-31693210,31693325-31693541
          Length = 257

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 40  IQCGVPKTYHFKNKDVDAVFGGAPEKGFYP 129
           +QCG+PKTY      V  V    PE+   P
Sbjct: 189 LQCGIPKTYSHARGMVCPVCNDRPEQAREP 218


>07_03_0475 +
           18544637-18544772,18544925-18545031,18545114-18545295,
           18545467-18545599,18545708-18545920
          Length = 256

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 220 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIA 333
           Y NK  V    K+      P Y EF I+YQ+  ++ IA
Sbjct: 147 YPNKNIV---FKITESSNFPNYLEFEIWYQQGNQDIIA 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,300,261
Number of Sequences: 37544
Number of extensions: 206471
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)