Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K12
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)                     28   2.2  
SB_55233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_50951| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_36376| Best HMM Match : DUF360 (HMM E-Value=0.53)                   26   8.8  
SB_42155| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 280  WEDNRFCTISRILQQLSYWCSXRCWLQRHSPFQIL*YSSSTLTWVYILGKGD 125
            W  N   ++S I+ Q S W   R    + S  +IL YS+ST ++  +L  GD
Sbjct: 1653 WSTN---SLSTIILQTSRWNLQRHGKTKRSKGRILYYSNSTASFQLVLRSGD 1701


>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 2245

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 36  CNPVWCPENVSLQEQRCRRSVWWSAR 113
           C P WC   +    ++  +  WWSAR
Sbjct: 478 CKPWWCSIKIEWCSKKTFKEWWWSAR 503


>SB_55233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 77  TKMSTQCLVERPKKGFIPFSK 139
           T +    L+ +PK+GFIPFSK
Sbjct: 29  TSLECLALLIQPKRGFIPFSK 49


>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 161 NVNLGLHPWKRG*NPFSGAPPNTASTSLFLK*YVF 57
           N NLG +PW +    F    PN   TS+ ++ Y +
Sbjct: 477 NANLGCYPWSK--QTFRHEGPNHIRTSVHIRVYAY 509


>SB_50951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -2

Query: 242 STAFLLV*XSMLASTS*SFPNFVVFIINVNLGLHPWKRG*NPFSGAPPNTASTSLFLK*Y 63
           STAF ++   +      +FP+      +V+     W R  NPF    P    TSL    Y
Sbjct: 9   STAFQILFNGLFYRVPTAFPSVATGKKSVSTEKVTWSRKKNPFKRRVPVHVPTSLKTLVY 68

Query: 62  VF 57
           VF
Sbjct: 69  VF 70


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 30  PSCNPVWCPENVSLQE 77
           PSCNP W  EN+ +QE
Sbjct: 260 PSCNPAW--ENIPIQE 273


>SB_36376| Best HMM Match : DUF360 (HMM E-Value=0.53)
          Length = 259

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
 Frame = -1

Query: 309 LVEDGELIVLGKITDSVQ------FQEFFNSFLIGVVIDVGFNVIV 190
           +++ G+ +++G + D V         + F+  + G++IDVG NVIV
Sbjct: 1   MLDVGDDVIVGLVLDVVDDVINGLMLDVFDDVIEGLIIDVGENVIV 46


>SB_42155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
 Frame = -1

Query: 309 LVEDGELIVLGKITDSVQ------FQEFFNSFLIGVVIDVGFNVIV 190
           +++ G+ +++G + D V         + F+  + G++IDVG NVIV
Sbjct: 1   MLDVGDDVIVGLVLDVVDDVINGLMLDVFDDVIEGLIIDVGENVIV 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,332
Number of Sequences: 59808
Number of extensions: 241644
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)