Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K12
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58758-11|AAB93425.2|  206|Caenorhabditis elegans Hypothetical p...    33   0.090
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical...    27   5.9  
AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF025467-8|ABR92604.1|  443|Caenorhabditis elegans X-box promote...    26   7.8  
AF025467-7|AAB71036.2|  485|Caenorhabditis elegans X-box promote...    26   7.8  

>U58758-11|AAB93425.2|  206|Caenorhabditis elegans Hypothetical
           protein ZK1127.3 protein.
          Length = 206

 Score = 32.7 bits (71), Expect = 0.090
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 70  FKNKDVDAVFGGAPEKGFYPLFQGCRPKLTLMMNTTK 180
           F+N+  D + GG PE+  YP    CRP L ++ +  K
Sbjct: 94  FRNQQRDLLMGGRPERTSYPPKYLCRPSLEMIEDKLK 130


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 298 WRTHSTWEDN-RFCTISRILQQLSYWCSXRC 209
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical
           protein Y47D3B.4 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 175 TKFGKDY--DVEANIDXYTNKKAVEEFLKLYRIGYLP 279
           TKFG++   D E N D   ++  V+ +LKL ++G  P
Sbjct: 30  TKFGEENSPDYEDNFDAEKDEIFVKNYLKLMQMGRAP 66


>AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical
           protein Y17D7A.1 protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 144 TSLEKGIKPFFGRSTKHCVDIFVLEVIRFRDTTLDCTRAMSPA 16
           T++   ++ F GR   HCV     EV+R     +DCT  +  A
Sbjct: 105 TNVPNSMEGFLGRP--HCVIFVDPEVVRCEKDLIDCTDLLRKA 145


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
          protein F40G9.12 protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 13 SSGAHCPRAIQCG 51
          +SG HCPR + CG
Sbjct: 28 TSGDHCPRVLSCG 40


>AF025467-8|ABR92604.1|  443|Caenorhabditis elegans X-box promoter
           element regulatedprotein 7, isoform b protein.
          Length = 443

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 175 TKFGKDYDVEANIDXYTNKKAVEEFL 252
           TKFG DY V+  ID   N+K+ E+ L
Sbjct: 178 TKFG-DYTVKIQIDDVENEKSTEDQL 202


>AF025467-7|AAB71036.2|  485|Caenorhabditis elegans X-box promoter
           element regulatedprotein 7, isoform a protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 175 TKFGKDYDVEANIDXYTNKKAVEEFL 252
           TKFG DY V+  ID   N+K+ E+ L
Sbjct: 178 TKFG-DYTVKIQIDDVENEKSTEDQL 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,882,221
Number of Sequences: 27780
Number of extensions: 181976
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)