Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K12
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   3.1  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   3.1  
At5g52920.1 68418.m06567 pyruvate kinase, putative similar to py...    27   4.1  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    27   4.1  
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    26   9.6  

>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 291 LIVLGKITDSVQFQEFFNSFLIGVVI 214
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 291 LIVLGKITDSVQFQEFFNSFLIGVVI 214
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At5g52920.1 68418.m06567 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 579

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 193 YDVEANIDXYTNKKAVEEFLKLYRIGYLPKYYEFS 297
           Y     I  +TN+K +++ L LY+ G  P Y EF+
Sbjct: 496 YRPSGTIYAFTNEKKIQQRLALYQ-GVCPIYMEFT 529


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
           SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/69 (20%), Positives = 29/69 (42%)
 Frame = +1

Query: 79  KDVDAVFGGAPEKGFYPLFQGCRPKLTLMMNTTKFGKDYDVEANIDXYTNKKAVEEFLKL 258
           ++V++  GG    G  P F   R     +  +T+F   Y+  + I       +    +++
Sbjct: 152 EEVESCSGGTEHSGKSPCFSNGRDSYDSIDGSTEFNISYNKASQISGGETNMSSSGVIRV 211

Query: 259 YRIGYLPKY 285
             +G +P Y
Sbjct: 212 ADLGAIPGY 220


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin-like protein
           my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 179 FVVFIINVNLGLHPW 135
           FVVF+IN+ +G H W
Sbjct: 14  FVVFLINIIVGSHVW 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,460,304
Number of Sequences: 28952
Number of extensions: 170715
Number of successful extensions: 394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)