Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K11
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    29   0.34 
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   5.5  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   5.5  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    25   7.2  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   7.2  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    25   9.5  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 176 RGDHQEYWSCRLFHI--SILKCTTSIHLCCR*RVKCQIIVNESINVYY 39
           R  H +++  R  H   S++KCTTS+HL C   V   +   +   +++
Sbjct: 218 RATHPQHF-IRFIHTLSSLIKCTTSVHLICMCSVPSTLFSRDCEQIFW 264


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 406 TSGKGSSAAGIRCS 447
           TSGKGSSAAG+  S
Sbjct: 395 TSGKGSSAAGLTAS 408


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 473 TLWSRRLLPEQRIPAA 426
           T WSRRLL  QR+P A
Sbjct: 410 THWSRRLLTFQRLPRA 425


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 168 SSGVLELSALPYFNSKMYHFYPPLLSLTSQ 79
           S G L  S+    NSK YH+  PLLS   +
Sbjct: 11  SKGFLVPSSTIGLNSKTYHYKFPLLSFVRE 40


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 236 ANRRGSAVRARDKRYRLQKQRGDHQ 162
           A RRG   + R+K+Y  +KQ+ D Q
Sbjct: 26  AFRRGDWEKEREKKYLQEKQQKDEQ 50


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 153 ELSALPYFNSKMYHFYPP 100
           ELS  P +N  ++H YPP
Sbjct: 241 ELSTFPDWNKFIFHEYPP 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,659
Number of Sequences: 5004
Number of extensions: 45922
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)