Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K11
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    29   1.8  
04_04_0967 + 29782460-29783725                                         28   4.2  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    28   4.2  
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668...    27   7.3  
09_03_0142 - 12718888-12719724,12719767-12720369                       27   7.3  
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150...    27   7.3  

>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
 Frame = -3

Query: 430 QPNCLFQTCSHSRAVLLYGESIGNVNAFPAVRC--KDWESFRIGQCD----TDIKLMGYG 269
           +P C+  TC+H RA  L+   +G+VN    ++C    WE    G+C+    T +  +   
Sbjct: 268 RPGCVMNTCAH-RACPLH---LGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTKMLNVRIR 322

Query: 268 STP--DTRGIYFLLTGEDPP 215
           S P  +  G+ ++  G DPP
Sbjct: 323 SLPCFEQEGMVWIWPGNDPP 342


>04_04_0967 + 29782460-29783725
          Length = 421

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 368 RLAVEQHGATVAARLEKAVRLLGSAVRVVVGV 463
           RLA  +HG  VAA     +R+ G A R+ V V
Sbjct: 318 RLAFAEHGLAVAAVARAVLRVSGLATRLAVNV 349


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 358  VNAFPAVRCKDWESFRIGQCDTDIKLMGYGSTPDTRGI--YFLLTGEDPPYGH-GINGTV 188
            V A  A R K +E   +  CD DI    YGS   + GI  Y+LL  E     H  + G  
Sbjct: 2448 VGALDAKRFKVFEERYLNFCDPDIPSFYYGSHYSSMGIVLYYLLRLEPFTALHRNLQGGK 2507

Query: 187  YKNNEGIIRSI 155
            + + + + +SI
Sbjct: 2508 FDHADRLFQSI 2518


>09_03_0167 +
           12965030-12965356,12966100-12966387,12966704-12966826,
           12967229-12967611,12967863-12968190,12968324-12968353,
           12968837-12968989,12969510-12969815
          Length = 645

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 341 SWECVHVADRLAVEQHGATVA 403
           SWE + V+DRLA   HGA +A
Sbjct: 83  SWESLGVSDRLASALHGAGLA 103


>09_03_0142 - 12718888-12719724,12719767-12720369
          Length = 479

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 461 RRLLPEQRIPAAELPFPDVQP 399
           RR+L +  +  AELPFPD  P
Sbjct: 67  RRVLDDDAVAVAELPFPDHLP 87


>04_03_0818 +
           20014685-20014687,20014792-20014831,20014988-20015025,
           20015359-20015485,20015571-20015797,20015919-20016064,
           20016166-20016284,20016711-20016799,20016881-20017003,
           20017123-20017158,20017464-20017562,20017642-20017833
          Length = 412

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 403 CTSGKGSSAAGIRCSGSSRRDHRVPLTRK 489
           C+ GKG+ + G    G    DH  P  RK
Sbjct: 141 CSGGKGNESTGDNFDGVPNIDHTQPFVRK 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,093
Number of Sequences: 37544
Number of extensions: 322814
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)