Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K11
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      28   5.0  
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    27   6.6  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    27   6.6  
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    27   6.6  

>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
           protein F26A3.8 protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 313 RIGQCDTDIKLMGYGSTPDTRGIYFLLTGEDPPYGHGINGTVYKNNEGI 167
           R+GQC T  +L G G   D     + LTG     G   NG+ Y  ++G+
Sbjct: 606 RLGQCFTQSRLTGVGLGRDDYCSTYDLTG-----GRATNGSEYTFSDGV 649


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 313 RIGQCDTDIKLMGYGSTPDTRGIYFLLTGEDPPYGHGINGTVYKNNEGI 167
           R+GQC T  +L G G   D     + LTG     G   NG+ Y  ++G+
Sbjct: 606 RLGQCFTQSRLTGVGLGRDDYCSTYDLTG-----GRATNGSEYTFSDGV 649


>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 313 RIGQCDTDIKLMGYGSTPDTRGIYFLLTGEDPPYGHGINGTVYKNNEGI 167
           R+GQC T  +L G    PD     + LT  D   G   NG+ Y  ++G+
Sbjct: 587 RLGQCFTQSRLTGVSLGPDN----YCLT-HDLSGGRSSNGSEYTFSDGV 630


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 152 SCRLFHISILKCTTSIH 102
           SCR+ H  +LK +TS+H
Sbjct: 618 SCRISHFDVLKSSTSVH 634


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 313 RIGQCDTDIKLMGYGSTPDTRGIYFLLTGEDPPYGHGINGTVYKNNEGI 167
           R+GQC T  +L G    PD     + LT  D   G   NG+ Y  ++G+
Sbjct: 587 RLGQCFTQSRLTGVSLGPDN----YCLT-HDLSGGRSSNGSEYTFSDGV 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,708
Number of Sequences: 27780
Number of extensions: 267827
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)