Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K10
         (391 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.27 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.7  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   7.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   10.0 

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.0 bits (52), Expect = 0.27
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 162 MPTLEAEPEQKDDKLIKERNKTNSGDNG 245
           +P ++   ++K+ K  KE++K NS  NG
Sbjct: 259 VPEVQCAVKRKEKKAQKEKDKPNSTTNG 286


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 105 EEKAKLRIGKNGARC 149
           E K   RIG NG +C
Sbjct: 780 EAKQVYRIGSNGLQC 794


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 183 PEQKDDKLIKERNKTNSGDN 242
           PE+ DD  I + N  N   N
Sbjct: 218 PEEDDDSNIPQNNPKNKQHN 237


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 318 PVEPKWVETDDGQIEI 365
           PV+P  + T + QIE+
Sbjct: 9   PVQPNAIPTTNNQIEM 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,663
Number of Sequences: 336
Number of extensions: 1026
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8225022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)