Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K10
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    40   1e-04
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   1.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   1.8  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   4.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   4.1  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    24   7.2  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    24   7.2  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    24   7.2  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    24   9.5  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    24   9.5  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 18/30 (60%), Positives = 19/30 (63%)
 Frame = +3

Query: 3   DDREDVWRHATNLIHVRPYSFFQSTGDINA 92
           DDR DVW    NLI V PY FF   GDIN+
Sbjct: 297 DDRGDVWDWNPNLIKVVPYEFFVGIGDINS 326


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 189  VRVQLLTWAFLLRRTGHRFYRFVVSLFPQQEAERLYRPLIERTSTA*RVLSWSHD 25
            +RV LL W  +        Y   +S+  Q  A  L RPL+   +T   +L+ S+D
Sbjct: 1321 LRVYLLVWDLIFYHFEETTYNIKLSIINQLHAMDLLRPLL---NTLVEILNLSYD 1372


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 102 VEEKAKLRIGKNGARCALKEMPTLEAEPEQKDDKLIKERNKTNSGDNGKIVKEMKSNKNT 281
           +EE+ +L + K   R   KE+PT E   ++  D+    ++  N     K++ +   NK+T
Sbjct: 212 LEERDELELRKR-TRKVQKEVPTGELYEKRCADEFKTRKDSGNGATYYKVIPDPSVNKDT 270


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 204 LIKERNKTNSGDNGKIVKEMKSNKNTXXXXXXXERPTEPVEPKWVETDDGQIEIEDPDDY 383
           +I E N TN  D+ K      SN  T       + P   VEP   E     +E ++P+DY
Sbjct: 358 VISELNFTNHNDDSK-----NSNITTSN-----DSPVNEVEPMAPELSSAVVEKKEPEDY 407


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 42  IHVRPY-SFFQSTGDINAPPPVEEKAKLRIGKNGARCALKEMPTLEAEPEQKDDKLIKER 218
           I  RP  ++FQS  D  A    E K K  + K   +   +E+P   A  + K+D+L  ++
Sbjct: 687 IRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKK 744

Query: 219 NKTNSGDNGK 248
           +   S    K
Sbjct: 745 STKKSKSKRK 754


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   DDREDVWRHATNLIHVRPYSFFQSTGDINAPPPVEEKAKLRI 128
           DD E++W    NL+  +P + F    DI +     ++A L++
Sbjct: 436 DDLEEIWSQGLNLL-TQPLNRFYQARDIVSLHGHNQQASLKV 476


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 390 ISNNHQDPLFLFVRRQFLPIS 328
           +S+ + DP  +F  R FLPI+
Sbjct: 189 VSDLNSDPFVMFNHRHFLPIA 209


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 72  STGDINAPPPVEE---KAKLRIGKNGARCALKEMPTLEAEPEQKDDKLIKERNKTNSGDN 242
           STG    P  +E+   K K    K     + K+  +  ++ E+K  K IK ++K  S  +
Sbjct: 182 STGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSS 241

Query: 243 GKIVKE 260
            + VKE
Sbjct: 242 VEKVKE 247


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +3

Query: 186 EQKDDKLIKERNKTNSGDNGKIVKEMKSNKNTXXXXXXXERPTEPVEPKWVETD 347
           +QK  K+  +R+  N   + + ++ ++S+KN        E+    ++ K+ E D
Sbjct: 105 QQKKKKVTGKRDLDNQSSDNEKLEGLESSKNIDDDIDEIEKAAAELKLKYREQD 158


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 312 TEPVEPKWVETDDGQIEIED 371
           T  V P  VET D Q+++ED
Sbjct: 803 TSDVSPASVETCDKQVQLED 822


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 108 EKAKLRIGKNGARCALKEMPTLEAEPEQKDDKLIKERNKTNSGDNG 245
           EKA+ + GKNG R  L +    E + ++K ++ IK+     S + G
Sbjct: 238 EKARRQFGKNGIR--LSQDAQEEEKQKKKYEQHIKKLLDGESNEEG 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,065
Number of Sequences: 5004
Number of extensions: 18479
Number of successful extensions: 74
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)