Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K10
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0283 - 24132112-24132189,24132227-24132745 29 0.99
08_02_1397 + 26744154-26744450,26745079-26745138,26745251-267453... 27 4.0
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 27 4.0
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 27 5.3
07_03_0970 - 23034521-23034928,23036173-23037081 27 7.0
02_04_0150 - 20215070-20217577 27 7.0
01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567 27 7.0
10_08_0643 + 19541991-19542188,19543261-19543515,19543598-195437... 26 9.2
09_04_0298 + 16475693-16475849,16476148-16476265,16476364-164764... 26 9.2
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 26 9.2
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 26 9.2
>04_04_0283 - 24132112-24132189,24132227-24132745
Length = 198
Score = 29.5 bits (63), Expect = 0.99
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 327 PKWVETDDGQIEIEDPDD 380
PKW ET+D Q +DP D
Sbjct: 8 PKWTETEDQQATFDDPQD 25
>08_02_1397 +
26744154-26744450,26745079-26745138,26745251-26745331,
26745437-26745637,26745746-26745841,26746479-26746675,
26746774-26747005
Length = 387
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 120 VSLFPQQEAERLYRPLIERTSTA*RVLSWS 31
+S PQ+ + + +PL+ RTS RV++WS
Sbjct: 136 LSYGPQKNSHEISKPLLRRTSDG-RVVNWS 164
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 174 EAEPEQKDDKLIKERNKTNSGDNGKIVKEM-KSNKNTXXXXXXXERPTEPVEPKWVETDD 350
E +++ KL + + G NGK+VKE+ ++ + E E E E ++
Sbjct: 180 EKAAAREELKLERHHRRELEGANGKLVKEVARARQRVETERKARELMEEACEELSKEVEE 239
Query: 351 GQIEIE 368
Q E+E
Sbjct: 240 DQAEVE 245
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 204 LIKERNKTNSGDNGKIVKEMKSNKNTXXXXXXXERPTEPVEPKWVETDDGQIEIEDPD 377
+ K++ K ++G + K KSN +P +P +PK E D G ED D
Sbjct: 100 IAKKQTKVSNGSS----KSNKSNPKPSKQSNSNSKPAKPPQPK-DEEDSGPEGTEDED 152
>07_03_0970 - 23034521-23034928,23036173-23037081
Length = 438
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 369 PLFLFVRRQFLPISVRLVLLV 307
PLF F R+Q LP +R LLV
Sbjct: 295 PLFEFCRKQVLPDDIRQALLV 315
>02_04_0150 - 20215070-20217577
Length = 835
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 184 GSASNVGISFKAHRAPFLPIRSFAFSSTGG 95
G +S I F+A A FLP SF FS G
Sbjct: 82 GHSSATRIFFRASFALFLPFMSFMFSQAKG 111
>01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567
Length = 602
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 93 PPPVEEKAKLRIGKNGARCALKEMPT 170
PP + + A++ K GAR AL +MP+
Sbjct: 354 PPALRDCARINPSKPGARWALDQMPS 379
>10_08_0643 +
19541991-19542188,19543261-19543515,19543598-19543722,
19543815-19543859,19544618-19544699,19545099-19545167,
19545276-19545446,19545530-19545595,19546236-19546273,
19547478-19547759,19548286-19548419,19548887-19548981,
19549083-19549127,19549250-19549309,19549483-19549584,
19549852-19549903,19549982-19550034,19550138-19550202,
19550579-19550630,19550780-19550857
Length = 688
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 96 PPVEEKAKLRIGKNGARCALKEMPTLEAE 182
PP+ ++ K K+ A+ ALK+MP+ E E
Sbjct: 305 PPLWDRVKALQLKDAAQLALKKMPSSEQE 333
>09_04_0298 +
16475693-16475849,16476148-16476265,16476364-16476467,
16478794-16478808,16479276-16479481,16479567-16479719,
16479842-16480123
Length = 344
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 183 VQLLTWAFLLRRTGHRFYRFVVSLFPQQ 100
VQ +T AF LR+ FY+ ++S P+Q
Sbjct: 276 VQGVTKAFKLRKEKEEFYQKIMSSMPEQ 303
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 26.2 bits (55), Expect = 9.2
Identities = 22/90 (24%), Positives = 37/90 (41%)
Frame = +3
Query: 117 KLRIGKNGARCALKEMPTLEAEPEQKDDKLIKERNKTNSGDNGKIVKEMKSNKNTXXXXX 296
+L + K L + LE E ++ L+ E + S + G + K+ K +
Sbjct: 279 QLMLLKQKQTLLLDTLRQLETEKVDLENTLVDESQR-QSKEYGSTSRS-KNEKYSEGSAS 336
Query: 297 XXERPTEPVEPKWVETDDGQIEIEDPDDYL 386
+ EP +P ETDD + D D+L
Sbjct: 337 ESDDYNEPQDPAEDETDDDENIYFDTRDFL 366
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 96 PPVEEKAKLRIGKNGARCALKEMPTLEAE 182
PP+ ++ K K+ A+ ALK+MP+ E E
Sbjct: 289 PPLWDRVKALQLKDAAQLALKKMPSSEQE 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,585,067
Number of Sequences: 37544
Number of extensions: 120557
Number of successful extensions: 453
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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