Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K10
(391 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 54 5e-08
SB_8398| Best HMM Match : Neuromodulin (HMM E-Value=8.4) 30 0.58
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24) 29 1.0
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 29 1.4
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05) 29 1.4
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 28 2.4
SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19) 28 2.4
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 27 5.4
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 27 7.2
SB_26545| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_51066| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_27236| Best HMM Match : P19Arf_N (HMM E-Value=5.1) 26 9.5
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 53.6 bits (123), Expect = 5e-08
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +3
Query: 3 DDREDVWRHATNLIHVRPYSFFQSTGDINAPPPVEE 110
DDR DVW +A +LI V+PY FF+ GDINAPP ++
Sbjct: 1197 DDRADVWNNAPSLIKVKPYQFFKGVGDINAPPDKQD 1232
>SB_8398| Best HMM Match : Neuromodulin (HMM E-Value=8.4)
Length = 234
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 162 MPTLEAEPEQKDDKLIK-ERNKTNSGDNGKIVKEMKSNKN 278
+P + E + DDK +K ++N+T+ D+ + K ++ NKN
Sbjct: 16 LPYKDMELSENDDKQVKPDQNRTDQMDSSHVEKSVEINKN 55
>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
Length = 1001
Score = 29.5 bits (63), Expect = 1.0
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +3
Query: 75 TGDINAPPPVEEKAK-----LRIGK-NGARCALKEMPTLEAEPEQKDDKLIKERNKTNSG 236
TG P P K K L + + G R KE+ L+AE E+KD KE + +G
Sbjct: 813 TGVRKTPSPSPSKTKDEGYYLNVWRAGGGRATDKELERLKAELEEKD----KEIKRLKAG 868
Query: 237 DNGKIVKEMKSNKNTXXXXXXXERPTEPVEPKWVETDDGQIEIE 368
+ K+ S++ R +PV + +TDD Q + +
Sbjct: 869 KPPTVRKQSTSSQKNVT------RIIKPVPEEQTDTDDKQCQTD 906
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 171 LEAEPEQKDD-KLIKERNKTNSGDNGKIVKEMKSNKNT 281
+EA PE DD +K N+ +N ++ ++K+N+NT
Sbjct: 2285 IEAAPELPDDYDAVKLDNERLQSENNNLIGKLKNNENT 2322
>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
Length = 407
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 96 PPVEEKAKLRIGKNGARCALKEMPTLEAEPEQKDDKLIKERNKTNSGDNGKIV 254
P V++ A + G N C + + + +DKL RNK N + G+++
Sbjct: 205 PHVKKAAVIEYGANIVECEISQKKRRKTSHWSDNDKLKIIRNKWNVDEEGRVI 257
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 96 PPVEEKAKLRIGKNGARCALKEM--PTLEAEPEQKDDKLIKERNKTNSGDNGKIVKEMKS 269
PPV K K R G NG +++ P E E KDD+++K + ++ + + + E
Sbjct: 48 PPV--KTKKRAGGNGGAKDTQKVAEPAPENEDFPKDDEILKSKEESANWKDCQKAGEEFG 105
Query: 270 NKN 278
NKN
Sbjct: 106 NKN 108
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 105 EEKAKLRIGKNGARCALKEMPTLEAEPEQKDDKL 206
E+ A+L G CA++E L +QKDDKL
Sbjct: 322 EKLAELEHGVEELECAVEESQKLHQAIQQKDDKL 355
>SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)
Length = 320
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 105 EEKAKLRIGKNGARCALKEMPTLEAEPEQKDDKL 206
E+ A+L G CA++E L +QKDDKL
Sbjct: 281 EKLAELEHGVEELECAVEESQKLHQAIQQKDDKL 314
>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 600
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +3
Query: 177 AEPEQKDDKLIKERNKTNSGDNGKIVKEMKSNKNTXXXXXXXERPTEPVEPK 332
++ +K K ++ + N G+ +++ +K+T ERP P PK
Sbjct: 113 SKQRRKRRKNVRNSKEENGQLEGEEPMKLQEDKDTSSGTTSTERPERPNRPK 164
>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 171 LEAEPEQKDDKLIKERNKTNSGDNGK 248
LE E +KD+ L E+NKT+ D +
Sbjct: 95 LEQEVREKDEALFAEKNKTDKVDRAR 120
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 153 LKEMPTLEAEPEQKDDKLIKERNKTNSGDN 242
+KEM E +P++KD++ K K GD+
Sbjct: 215 VKEMSLEEKQPQKKDNQKGKSEKKKGKGDD 244
>SB_26545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 42 IHVRPYSFFQSTGDINAPPPVE 107
I V PY FF T ++N PVE
Sbjct: 86 IEVLPYKFFIGTWNVNGKSPVE 107
>SB_51066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/67 (20%), Positives = 27/67 (40%)
Frame = +3
Query: 180 EPEQKDDKLIKERNKTNSGDNGKIVKEMKSNKNTXXXXXXXERPTEPVEPKWVETDDGQI 359
+ + DD + N N+ +N KI+ +N N + + + + DD
Sbjct: 32 DDDDDDDDDDDDNNNNNNNNNNKIICTCTNNNNNDNDNDNDDDDDDDDDDDDDDDDDDDD 91
Query: 360 EIEDPDD 380
+ +D DD
Sbjct: 92 DDDDDDD 98
>SB_27236| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
Length = 395
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 2 RRSRRRMASCDQLNTR-QAVLVLSINGRYKRSASC*GKS 115
R RRR AS L + VLV++ +GR+++++ C G S
Sbjct: 227 RHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVCNGNS 265
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 99 PVEEKAKLRIGKNGARCALKEMPTLEAEPEQKDDKLIKERNKTNSGDNGKIVKEMKSNKN 278
P+++ +KLR G R +E + EP + D K+ + D G++ + + K+
Sbjct: 317 PMKDDSKLRKDNKGPRKDDREPRRDDREPRRDDRATRKDDRQPRGDDRGQMKDDREPMKD 376
Query: 279 TXXXXXXXERP-TEPVEPK 332
+P + EP+
Sbjct: 377 DSKLRKDESKPRRDDKEPR 395
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +3
Query: 111 KAKLRIGKNGARCALKEMPTLEAEPEQKDDKL-----IKERNK--TNSGDNGKIVKEMKS 269
K LRI + C K L + ++KD K+ E+NK T + + GK+V E+++
Sbjct: 1164 KDSLRIAREAKDCTFKRNKELAEQLQRKDAKIHNLTATMEKNKKSTENENWGKMVDELRA 1223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,793,294
Number of Sequences: 59808
Number of extensions: 137540
Number of successful extensions: 547
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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