Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K09
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                   104   2e-23
SB_53310| Best HMM Match : VHS (HMM E-Value=0)                         64   4e-11
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      39   0.001
SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_40828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)                      27   2.9  
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)                   27   2.9  
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)               27   3.8  
SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)                 27   3.8  
SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_33732| Best HMM Match : Pkinase (HMM E-Value=9e-10)                 27   5.0  
SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09)                 27   5.0  
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_21647| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)                     26   8.8  

>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score =  104 bits (249), Expect = 2e-23
 Identities = 48/72 (66%), Positives = 58/72 (80%)
 Frame = +2

Query: 113 QATDGSLPSENWALNMEICDIINSTADGPKDAIKAIRKRLTMSAGKNYTIVMYTLTVLET 292
           +ATDG L SE+W+LN+EICDIIN T +GPKDA KAIRKRLT +  KN+  V+ TLTVLE+
Sbjct: 2   RATDGGLASEDWSLNLEICDIINETDEGPKDAAKAIRKRLTNN--KNFKSVLLTLTVLES 59

Query: 293 CVKNCSRSFHVL 328
           C+KNC   FHVL
Sbjct: 60  CIKNCGHRFHVL 71


>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
          Length = 253

 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 31/72 (43%), Positives = 45/72 (62%)
 Frame = +2

Query: 110 EQATDGSLPSENWALNMEICDIINSTADGPKDAIKAIRKRLTMSAGKNYTIVMYTLTVLE 289
           E+AT     +E+W + MEICD I  + +GPKDA+++I KR+     +N  I M  LT+L 
Sbjct: 45  EKATSELNTTEDWQIIMEICDKIPRSPNGPKDALRSIMKRV---IHRNPHIAMQALTLLS 101

Query: 290 TCVKNCSRSFHV 325
            CV NC + FH+
Sbjct: 102 ACVNNCGKVFHL 113


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +2

Query: 197 PKDAIKAIRKRLTMSAGKNYTIVMYTLTVLETCVKNCSRSFH 322
           PK A+ AI+K++     +N  +  Y LTVLE C+KNC    H
Sbjct: 110 PKFAVSAIKKKMF---DRNPHVAKYALTVLEACMKNCGSIIH 148


>SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 86  STPVGQKIEQATDGSLPSENWALNMEICDIINST 187
           STPV  ++ +A  G    E+  +N E C + NST
Sbjct: 435 STPVWTQVGEAYKGGQQGEDMCMNGEFCYMYNST 468


>SB_40828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 104 KIEQATDGSLPSENWALNMEICDIINSTADGPKDAIKAIRKRLTMSAGKNYTIVMYTLTV 283
           +I+ +T  S  + N   + EI  I+   A G KD+ K  RKR      ++ T V +  T 
Sbjct: 19  RIDASTSPSYAATNGGKSREIL-IMRKLAQGTKDSYKCRRKRRKQPLQRSITNVTFKATR 77

Query: 284 L 286
           L
Sbjct: 78  L 78


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 41  FNFAKMSFFGVGNPFSTPVGQKIEQATDGSLPSENWALNMEICDIINSTADGPKDAIKAI 220
           F  A  +  G G+  S  V  K+  A  G  P +N A   E+    N+T   P   I+  
Sbjct: 295 FTCAAYNLAGGGHKASVTVQAKVPPAITGFSPPQNVAEGSEVMLECNATGSSPNITIERN 354

Query: 221 RKRLTMSAGKN 253
            +    + GK+
Sbjct: 355 GEAQLSTTGKH 365


>SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 88  RKWIPYTKEGHFCE 47
           R W P+T+EG FCE
Sbjct: 125 RSWTPHTEEGCFCE 138


>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
          Length = 132

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 88  RKWIPYTKEGHFCE 47
           R W P+T+EG FCE
Sbjct: 92  RSWTPHTEEGCFCE 105


>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
          Length = 316

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 289 FQHSKGVHYNSVVFSSTHSKPFPYCFDGVFWAICGTVNNITYFHIKGP 146
           FQH +   Y+ VV S     P P+ + G +    G    + ++ + GP
Sbjct: 250 FQHHQACGYSYVVVSEREDYPAPHFWPGFWLDRPGFALLVLFYSLSGP 297


>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
          Length = 825

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 77  NPFSTPVGQKIEQATDGSLPS 139
           NP STPV     +AT G LPS
Sbjct: 145 NPLSTPVSTTSTKATQGLLPS 165


>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 916

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 331 GEHMERSRTVLDACFQHSKGVHYNSVVFSST 239
           G+H E+ R +LD C +++  +++   VF +T
Sbjct: 125 GDHDEKLRNLLDVCARNNIKLNHQKSVFKTT 155


>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
          Length = 1167

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 331 GEHMERSRTVLDACFQHSKGVHYNSVVFSST 239
           G+H E+ R +LD C +++  +++   VF +T
Sbjct: 584 GDHDEKLRNLLDVCARNNIKLNHQKSVFKTT 614


>SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 331 GEHMERSRTVLDACFQHSKGVHYNSVVFSST 239
           G+H E+ R +LD C +++  +++   VF +T
Sbjct: 266 GDHDEKLRNLLDVCARNNIKLNHQKSVFKTT 296


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 331 GEHMERSRTVLDACFQHSKGVHYNSVVFSST 239
           G+H E+ R +LD C +++  +++   VF +T
Sbjct: 444 GDHDEKLRNLLDVCARNNIKLNHQKSVFKTT 474


>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 331 GEHMERSRTVLDACFQHSKGVHYNSVVFSST 239
           G+H E+ R +LD C +++  +++   VF +T
Sbjct: 100 GDHDEKLRNLLDVCARNNIKLNHQKSVFKTT 130


>SB_33732| Best HMM Match : Pkinase (HMM E-Value=9e-10)
          Length = 322

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -1

Query: 186 VLLIISHISILRAQFSEGNDPSVACSIF*PTGVEN-GF-PTPKKDI-FAKLNNGIFI 25
           +L+IIS+IS    +++EGN P +       TG    GF    K D+  AK+  G+F+
Sbjct: 197 MLIIISNISQQLLEYNEGNSPIIV-----DTGERTYGFCEDTKHDVTLAKIEEGLFL 248


>SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09)
          Length = 562

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = -1

Query: 243 ALIVSLFLIALMASFGPSAVLLIISHISILRAQFSEGNDPSVACSIF*PTGVENGFP 73
           A+I    ++ L   +G    L  I+ I +  +  ++ ND  +  S++      NG P
Sbjct: 127 AIIAHYVMVCLNPCYGIFGALYYINRIFLFASVAAQSNDVDIKASVYFTWTKHNGIP 183


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 95  VGQKIEQATDGSLPSENWALNMEICDII 178
           +G+K+    D +LP E ++L    CD++
Sbjct: 110 LGKKVTLMPDDALPPEGFSLGAHECDVV 137


>SB_21647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 237 IVSLFLIALMASFGPSAVLLIISHISI 157
           ++SL LIA +  +GPS VL+ + +  +
Sbjct: 231 VLSLVLIAYLFCYGPSCVLIYLMNFCV 257


>SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)
          Length = 374

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 210 MASFGPSAVLLIISHISILRAQFSEGNDPSVACSIF*PTGVENGFPTP 67
           +  FG  A  ++I+ I +  A F EGN  ++  S +   G +  FP P
Sbjct: 249 LVDFGDIASSMVINEIVVAMAAFMEGN-CNIEVSGYLLAGYQALFPVP 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,280,935
Number of Sequences: 59808
Number of extensions: 236735
Number of successful extensions: 573
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)